miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 51716 0.69 0.697693
Target:  5'- cUCGGUGCGCgcggGUGUGCUGAggucguagauccGCACgUGc -3'
miRNA:   3'- -AGCCGCGCGa---CGCGUGAUU------------UGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 85611 0.69 0.687415
Target:  5'- aCGGcCGCGCaauuaGCGCGCUGuAGCGCUg- -3'
miRNA:   3'- aGCC-GCGCGa----CGCGUGAU-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 140 0.7 0.67709
Target:  5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3'
miRNA:   3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 12134 0.7 0.64592
Target:  5'- uUCGGUGaCGgUGCGCACcuuguuGCACCg- -3'
miRNA:   3'- -AGCCGC-GCgACGCGUGauu---UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 67807 0.71 0.614648
Target:  5'- gUUGGCGCGCgcugGCuGCGCggcgccAAACGCUUGc -3'
miRNA:   3'- -AGCCGCGCGa---CG-CGUGa-----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 22986 0.71 0.614648
Target:  5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3'
miRNA:   3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5'
21190 5' -55.9 NC_004778.3 + 108351 0.71 0.614648
Target:  5'- cUCcGCGgGCUGCaccGCGCU-GACGCCUGu -3'
miRNA:   3'- -AGcCGCgCGACG---CGUGAuUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 63694 0.71 0.573176
Target:  5'- cCGGCuCGCUGCGC-C-AAACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCGuGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 98194 0.72 0.548595
Target:  5'- cUCGGCGCGaggUGCGCGCgccacggacagcAACGCCUc -3'
miRNA:   3'- -AGCCGCGCg--ACGCGUGau----------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 119918 0.72 0.538449
Target:  5'- aCGGCGCGCaaaucgucgauacGCGCGCgguACGCCUc -3'
miRNA:   3'- aGCCGCGCGa------------CGCGUGauuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 34441 0.72 0.522352
Target:  5'- gUCGGCGCaCgGCGCGCgcggaaaGAACGCCUc -3'
miRNA:   3'- -AGCCGCGcGaCGCGUGa------UUUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 21892 0.73 0.5025
Target:  5'- aCGGCGCGCUGCucuGCGgUAagcGACGCgUGc -3'
miRNA:   3'- aGCCGCGCGACG---CGUgAU---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 86310 0.73 0.463842
Target:  5'- gCGGCGCGCcGCgGCGCcgucgAAGCGCUUGc -3'
miRNA:   3'- aGCCGCGCGaCG-CGUGa----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 52065 0.74 0.426796
Target:  5'- cCGGCGCG-UGCGCAUU--GCACCa- -3'
miRNA:   3'- aGCCGCGCgACGCGUGAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91139 0.74 0.425892
Target:  5'- cUCGGCGCGCggucgcgUGCGCGCU-GGCGCa-- -3'
miRNA:   3'- -AGCCGCGCG-------ACGCGUGAuUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 21249 0.76 0.32703
Target:  5'- -aGGCGCGUUGCGCAUUAcauACAUUUGc -3'
miRNA:   3'- agCCGCGCGACGCGUGAUu--UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 128036 0.8 0.191272
Target:  5'- aUCGGCGCGCUGCuGCACUuuuacaggauGGAUGCCa- -3'
miRNA:   3'- -AGCCGCGCGACG-CGUGA----------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 33670 0.81 0.177154
Target:  5'- cCGGCGCGCUGcCGCGCggauAGCGCCc- -3'
miRNA:   3'- aGCCGCGCGAC-GCGUGau--UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 119198 1.08 0.002547
Target:  5'- aUCGGCGCGCUGCGCACUAAACACCUGc -3'
miRNA:   3'- -AGCCGCGCGACGCGUGAUUUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.