miRNA display CGI


Results 41 - 60 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 5371 0.67 0.795737
Target:  5'- aUCaGCGCGCcGUGCAuCUgcacGAGCACUUGc -3'
miRNA:   3'- -AGcCGCGCGaCGCGU-GA----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 23993 0.67 0.828637
Target:  5'- aUCGGC-CGCUGCGUgaccguuaagggucACUAu-CGCCUc -3'
miRNA:   3'- -AGCCGcGCGACGCG--------------UGAUuuGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 140 0.7 0.67709
Target:  5'- gCGGCGCGUccgcgGCGUAC--AGCGCCa- -3'
miRNA:   3'- aGCCGCGCGa----CGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 53167 0.67 0.839616
Target:  5'- aCGGCGCGCgGCGUuuCUAccuuuAACAgCCUu -3'
miRNA:   3'- aGCCGCGCGaCGCGu-GAU-----UUGU-GGAc -5'
21190 5' -55.9 NC_004778.3 + 33670 0.81 0.177154
Target:  5'- cCGGCGCGCUGcCGCGCggauAGCGCCc- -3'
miRNA:   3'- aGCCGCGCGAC-GCGUGau--UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 122020 0.67 0.822594
Target:  5'- gUGGCGCcgacaagcaGCUGCGU-UUAAACGCCg- -3'
miRNA:   3'- aGCCGCG---------CGACGCGuGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 81460 0.67 0.822594
Target:  5'- --uGCGCGCgUGCGCGCguacuGGCGCgUGc -3'
miRNA:   3'- agcCGCGCG-ACGCGUGau---UUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 128036 0.8 0.191272
Target:  5'- aUCGGCGCGCUGCuGCACUuuuacaggauGGAUGCCa- -3'
miRNA:   3'- -AGCCGCGCGACG-CGUGA----------UUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 21249 0.76 0.32703
Target:  5'- -aGGCGCGUUGCGCAUUAcauACAUUUGc -3'
miRNA:   3'- agCCGCGCGACGCGUGAUu--UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 36549 0.73 0.463842
Target:  5'- cCGGCuCGCUGCGgcucaaGCUGGACGCCg- -3'
miRNA:   3'- aGCCGcGCGACGCg-----UGAUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 86310 0.73 0.463842
Target:  5'- gCGGCGCGCcGCgGCGCcgucgAAGCGCUUGc -3'
miRNA:   3'- aGCCGCGCGaCG-CGUGa----UUUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 98194 0.72 0.548595
Target:  5'- cUCGGCGCGaggUGCGCGCgccacggacagcAACGCCUc -3'
miRNA:   3'- -AGCCGCGCg--ACGCGUGau----------UUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 22986 0.71 0.614648
Target:  5'- uUUGcGCGCGCaGCGCGCUcAGCGCgUUGg -3'
miRNA:   3'- -AGC-CGCGCGaCGCGUGAuUUGUG-GAC- -5'
21190 5' -55.9 NC_004778.3 + 59470 0.66 0.855855
Target:  5'- gCGGCGgGCgcGCGCAUUcgGUACCUa -3'
miRNA:   3'- aGCCGCgCGa-CGCGUGAuuUGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 74154 0.69 0.698718
Target:  5'- uUCGGC-CGCUGCGCGCgccagcgacucguACACUUc -3'
miRNA:   3'- -AGCCGcGCGACGCGUGauu----------UGUGGAc -5'
21190 5' -55.9 NC_004778.3 + 2194 0.69 0.718068
Target:  5'- -gGGaGCGCUggauaGCGCGCUAGugGCCa- -3'
miRNA:   3'- agCCgCGCGA-----CGCGUGAUUugUGGac -5'
21190 5' -55.9 NC_004778.3 + 112341 0.68 0.7675
Target:  5'- -aGGCGCGCcGCGCGCacagcAACACg-- -3'
miRNA:   3'- agCCGCGCGaCGCGUGau---UUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 99397 0.68 0.786465
Target:  5'- aCGGCGCGuUUGCGUucACUAcuGACgAUCUGu -3'
miRNA:   3'- aGCCGCGC-GACGCG--UGAU--UUG-UGGAC- -5'
21190 5' -55.9 NC_004778.3 + 11017 0.67 0.81381
Target:  5'- -aGGCGCGCcGUGCAacccGCACCc- -3'
miRNA:   3'- agCCGCGCGaCGCGUgauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 91091 0.67 0.81381
Target:  5'- --uGCGCGCUaGCGCGCgcGACgACCg- -3'
miRNA:   3'- agcCGCGCGA-CGCGUGauUUG-UGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.