miRNA display CGI


Results 61 - 80 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 108728 0.72 0.5425
Target:  5'- gUGGCaGCGCUGCGuCGCg--GCACCa- -3'
miRNA:   3'- aGCCG-CGCGACGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 86362 0.67 0.812922
Target:  5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3'
miRNA:   3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 124082 0.74 0.426796
Target:  5'- aCGGCGCGCugaUGCGCGCgguuGGCgGCCUc -3'
miRNA:   3'- aGCCGCGCG---ACGCGUGau--UUG-UGGAc -5'
21190 5' -55.9 NC_004778.3 + 106458 0.74 0.417811
Target:  5'- cUGaGCGCGCUGCGCGCgcaAAACGCg-- -3'
miRNA:   3'- aGC-CGCGCGACGCGUGa--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 7153 0.77 0.290873
Target:  5'- cUCGGCGgGCgGCGCGCcGAGCACUa- -3'
miRNA:   3'- -AGCCGCgCGaCGCGUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 95004 0.71 0.614648
Target:  5'- cCGcGCGCGCcGUGCGCcGAcgggcagguGCGCCUGg -3'
miRNA:   3'- aGC-CGCGCGaCGCGUGaUU---------UGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 126938 0.71 0.625069
Target:  5'- uUCGGCcaCGCUGCGCucgaauggguGCUuGACACCg- -3'
miRNA:   3'- -AGCCGc-GCGACGCG----------UGAuUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61630 0.67 0.795737
Target:  5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3'
miRNA:   3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110876 0.68 0.77705
Target:  5'- -aGGCGCGUguacaGCGaacuGCUGgccAGCGCCUGg -3'
miRNA:   3'- agCCGCGCGa----CGCg---UGAU---UUGUGGAC- -5'
21190 5' -55.9 NC_004778.3 + 125972 0.68 0.748034
Target:  5'- gCGGCGgaGCUGCaGCGCaUGAAgGCCg- -3'
miRNA:   3'- aGCCGCg-CGACG-CGUG-AUUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 32455 0.67 0.804855
Target:  5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3'
miRNA:   3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 118864 0.66 0.885762
Target:  5'- aCGGCGCGCgcaCGCaACUGAGgACaaaUGc -3'
miRNA:   3'- aGCCGCGCGac-GCG-UGAUUUgUGg--AC- -5'
21190 5' -55.9 NC_004778.3 + 10491 0.66 0.885762
Target:  5'- cUGGCGuCGgUGUGCGCc-AACGCCg- -3'
miRNA:   3'- aGCCGC-GCgACGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 3229 0.66 0.885762
Target:  5'- gUGGCGCGCcGUGauCAC-GGACACCa- -3'
miRNA:   3'- aGCCGCGCGaCGC--GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61974 0.66 0.885762
Target:  5'- gUCGGgGCGCuUGC-CGCU--GCGCgUGg -3'
miRNA:   3'- -AGCCgCGCG-ACGcGUGAuuUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 9905 0.66 0.885762
Target:  5'- -gGGCGCGgUGUGCGCUuuaguGAAaACCg- -3'
miRNA:   3'- agCCGCGCgACGCGUGA-----UUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 34453 0.66 0.878622
Target:  5'- -gGGCaCGCUGCGCGuCgagGAgcGCACCg- -3'
miRNA:   3'- agCCGcGCGACGCGU-Ga--UU--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17408 0.68 0.786465
Target:  5'- -gGGCGCGCUGgGCAacgauUACCg- -3'
miRNA:   3'- agCCGCGCGACgCGUgauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 110104 0.71 0.625069
Target:  5'- aCGGCGUGC-GCGC-C-GAGCGCUUGg -3'
miRNA:   3'- aGCCGCGCGaCGCGuGaUUUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.