miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21190 5' -55.9 NC_004778.3 + 17408 0.68 0.786465
Target:  5'- -gGGCGCGCUGgGCAacgauUACCg- -3'
miRNA:   3'- agCCGCGCGACgCGUgauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 111596 0.68 0.786465
Target:  5'- aCGGCGCGCgGUGuUACgc-GCGCCg- -3'
miRNA:   3'- aGCCGCGCGaCGC-GUGauuUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61630 0.67 0.795737
Target:  5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3'
miRNA:   3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 10491 0.66 0.885762
Target:  5'- cUGGCGuCGgUGUGCGCc-AACGCCg- -3'
miRNA:   3'- aGCCGC-GCgACGCGUGauUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 3229 0.66 0.885762
Target:  5'- gUGGCGCGCcGUGauCAC-GGACACCa- -3'
miRNA:   3'- aGCCGCGCGaCGC--GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 61974 0.66 0.885762
Target:  5'- gUCGGgGCGCuUGC-CGCU--GCGCgUGg -3'
miRNA:   3'- -AGCCgCGCG-ACGcGUGAuuUGUGgAC- -5'
21190 5' -55.9 NC_004778.3 + 9905 0.66 0.885762
Target:  5'- -gGGCGCGgUGUGCGCUuuaguGAAaACCg- -3'
miRNA:   3'- agCCGCGCgACGCGUGA-----UUUgUGGac -5'
21190 5' -55.9 NC_004778.3 + 34453 0.66 0.878622
Target:  5'- -gGGCaCGCUGCGCGuCgagGAgcGCACCg- -3'
miRNA:   3'- agCCGcGCGACGCGU-Ga--UU--UGUGGac -5'
21190 5' -55.9 NC_004778.3 + 33089 0.66 0.871253
Target:  5'- gCGGCcCGCUGcCGCGCU--ACACgUa -3'
miRNA:   3'- aGCCGcGCGAC-GCGUGAuuUGUGgAc -5'
21190 5' -55.9 NC_004778.3 + 9013 0.66 0.871253
Target:  5'- gCGGCGgGCUGCauuuguCGC-AGGCGCCg- -3'
miRNA:   3'- aGCCGCgCGACGc-----GUGaUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 17106 0.66 0.862891
Target:  5'- cUGuGCGCGCgGCGCGcCUAccguggcAACGCCg- -3'
miRNA:   3'- aGC-CGCGCGaCGCGU-GAU-------UUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 121900 0.67 0.839616
Target:  5'- --cGCGUGCUGgGCGCUcuGAGCACa-- -3'
miRNA:   3'- agcCGCGCGACgCGUGA--UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 94845 0.67 0.839616
Target:  5'- cCGGUGgGUUGCGCGCcgcacGGACACa-- -3'
miRNA:   3'- aGCCGCgCGACGCGUGa----UUUGUGgac -5'
21190 5' -55.9 NC_004778.3 + 34420 0.67 0.831199
Target:  5'- cCGGCaGCGCgGCGUGCccguACugCUGu -3'
miRNA:   3'- aGCCG-CGCGaCGCGUGauu-UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 95793 0.67 0.826059
Target:  5'- cCGGcCGCGCUGCGCcccguggauucuuuCUAAACaacgACCg- -3'
miRNA:   3'- aGCC-GCGCGACGCGu-------------GAUUUG----UGGac -5'
21190 5' -55.9 NC_004778.3 + 117675 0.67 0.822594
Target:  5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3'
miRNA:   3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5'
21190 5' -55.9 NC_004778.3 + 49393 0.67 0.822594
Target:  5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3'
miRNA:   3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5'
21190 5' -55.9 NC_004778.3 + 38355 0.67 0.81381
Target:  5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3'
miRNA:   3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5'
21190 5' -55.9 NC_004778.3 + 86362 0.67 0.812922
Target:  5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3'
miRNA:   3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5'
21190 5' -55.9 NC_004778.3 + 32455 0.67 0.804855
Target:  5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3'
miRNA:   3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.