Results 101 - 111 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21190 | 5' | -55.9 | NC_004778.3 | + | 61630 | 0.67 | 0.795737 |
Target: 5'- uUUGGCGcCGCgcagccaGCGCGCgccAACGCCg- -3' miRNA: 3'- -AGCCGC-GCGa------CGCGUGau-UUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 32455 | 0.67 | 0.804855 |
Target: 5'- gCGGCGCagccGCUGCGUgucgcCUuuGCACCa- -3' miRNA: 3'- aGCCGCG----CGACGCGu----GAuuUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 86362 | 0.67 | 0.812922 |
Target: 5'- aUCGGCGCGaccccaagcacCUGCaGCGCcuuauccaacuuaUGAACGCCg- -3' miRNA: 3'- -AGCCGCGC-----------GACG-CGUG-------------AUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 38355 | 0.67 | 0.81381 |
Target: 5'- gUCGcGCGCGCUaGCGCGCau--UGCCa- -3' miRNA: 3'- -AGC-CGCGCGA-CGCGUGauuuGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 43136 | 0.67 | 0.81381 |
Target: 5'- aCGGCGcCGCgGCGCGCcgcacguuuuUGAACGCg-- -3' miRNA: 3'- aGCCGC-GCGaCGCGUG----------AUUUGUGgac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 96502 | 0.67 | 0.817345 |
Target: 5'- gCGGCGUuguacgcccccaaacGCggGCGCAaaauggGAGCGCCUGc -3' miRNA: 3'- aGCCGCG---------------CGa-CGCGUga----UUUGUGGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 8801 | 0.67 | 0.822594 |
Target: 5'- gCGGCGagGCggcggGCGCGCUcagcgaauGGCGCCUa -3' miRNA: 3'- aGCCGCg-CGa----CGCGUGAu-------UUGUGGAc -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 56477 | 0.67 | 0.822594 |
Target: 5'- cUCGGaCGaaguggagGUUGCGC-CUGAGCACCg- -3' miRNA: 3'- -AGCC-GCg-------CGACGCGuGAUUUGUGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 49393 | 0.67 | 0.822594 |
Target: 5'- cCGGCcaGCGCcGCGUACUcgguauACugCUGa -3' miRNA: 3'- aGCCG--CGCGaCGCGUGAuu----UGugGAC- -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 117675 | 0.67 | 0.822594 |
Target: 5'- aUGGCGUGCUGCuguGCGCcgUGGACcgGCCg- -3' miRNA: 3'- aGCCGCGCGACG---CGUG--AUUUG--UGGac -5' |
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21190 | 5' | -55.9 | NC_004778.3 | + | 118864 | 0.66 | 0.885762 |
Target: 5'- aCGGCGCGCgcaCGCaACUGAGgACaaaUGc -3' miRNA: 3'- aGCCGCGCGac-GCG-UGAUUUgUGg--AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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