miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21191 5' -50 NC_004778.3 + 24973 0.66 0.996292
Target:  5'- aCAUUUGACUUUGUCGCuaCGGcCGg-- -3'
miRNA:   3'- gGUGAAUUGGAACAGCG--GCCaGUacc -5'
21191 5' -50 NC_004778.3 + 45617 0.66 0.995652
Target:  5'- gCCGCgc--CCUcGUCGCCGGcguugaguUUGUGGu -3'
miRNA:   3'- -GGUGaauuGGAaCAGCGGCC--------AGUACC- -5'
21191 5' -50 NC_004778.3 + 121328 0.66 0.994925
Target:  5'- -aGCUgcGCCgUGUCggcgauaaGCgGGUCAUGGu -3'
miRNA:   3'- ggUGAauUGGaACAG--------CGgCCAGUACC- -5'
21191 5' -50 NC_004778.3 + 7001 0.67 0.994101
Target:  5'- aCCGuCUcGAUCUUGUCGCgcauaucgucgCGGUCAUa- -3'
miRNA:   3'- -GGU-GAaUUGGAACAGCG-----------GCCAGUAcc -5'
21191 5' -50 NC_004778.3 + 49287 0.67 0.993835
Target:  5'- aCCGCU----CUUGUCGCCgaacagcgcggcgcGGUCAUuGGa -3'
miRNA:   3'- -GGUGAauugGAACAGCGG--------------CCAGUA-CC- -5'
21191 5' -50 NC_004778.3 + 34560 0.67 0.992134
Target:  5'- aCACgc-ACCgaaUGUCGCCGcUCAUGu -3'
miRNA:   3'- gGUGaauUGGa--ACAGCGGCcAGUACc -5'
21191 5' -50 NC_004778.3 + 35204 0.68 0.988243
Target:  5'- -aGCUUGACUUUGgcgccCGCCGuGUCGUa- -3'
miRNA:   3'- ggUGAAUUGGAACa----GCGGC-CAGUAcc -5'
21191 5' -50 NC_004778.3 + 59609 0.69 0.97617
Target:  5'- gCCACUUGGCCgaaaaccgGUCGuCCGGauaCAcuUGGu -3'
miRNA:   3'- -GGUGAAUUGGaa------CAGC-GGCCa--GU--ACC- -5'
21191 5' -50 NC_004778.3 + 44991 0.69 0.967512
Target:  5'- aCCGC--GACCa-GUCGCUGGUUuUGGa -3'
miRNA:   3'- -GGUGaaUUGGaaCAGCGGCCAGuACC- -5'
21191 5' -50 NC_004778.3 + 32463 0.69 0.967512
Target:  5'- gCCGCU--GCg-UGUCGCCuuugcaccagcGGUCGUGGc -3'
miRNA:   3'- -GGUGAauUGgaACAGCGG-----------CCAGUACC- -5'
21191 5' -50 NC_004778.3 + 23281 0.7 0.964185
Target:  5'- gUACUUGACCguguUGUUGCCGGgc--GGa -3'
miRNA:   3'- gGUGAAUUGGa---ACAGCGGCCaguaCC- -5'
21191 5' -50 NC_004778.3 + 74691 0.7 0.964185
Target:  5'- cUCACUU--CCUUGUCGCUcGUCuccuUGGa -3'
miRNA:   3'- -GGUGAAuuGGAACAGCGGcCAGu---ACC- -5'
21191 5' -50 NC_004778.3 + 49118 0.7 0.952795
Target:  5'- uCCACgUAAUCggGUugCGCCGGUCccacGUGGa -3'
miRNA:   3'- -GGUGaAUUGGaaCA--GCGGCCAG----UACC- -5'
21191 5' -50 NC_004778.3 + 13886 0.72 0.917482
Target:  5'- gUC-CUUGGCCagcgcuaugagaUUGUCGCCGcUCAUGGu -3'
miRNA:   3'- -GGuGAAUUGG------------AACAGCGGCcAGUACC- -5'
21191 5' -50 NC_004778.3 + 117126 1.13 0.00651
Target:  5'- gCCACUUAACCUUGUCGCCGGUCAUGGc -3'
miRNA:   3'- -GGUGAAUUGGAACAGCGGCCAGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.