Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 25238 | 0.66 | 0.748904 |
Target: 5'- -----uGAUCGCGagCCGGGUCgUCGCc -3' miRNA: 3'- uuucauCUGGCGCg-GGCCCAGgAGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 55865 | 0.66 | 0.739177 |
Target: 5'- uAAGGUAGGCCGUGUguUCGGcGUCaC-CACg -3' miRNA: 3'- -UUUCAUCUGGCGCG--GGCC-CAG-GaGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 120625 | 0.66 | 0.738199 |
Target: 5'- -uAGUAGGCgccauucgcugagCGCGCCCGccgCCUCGCc -3' miRNA: 3'- uuUCAUCUG-------------GCGCGGGCccaGGAGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 41125 | 0.66 | 0.719453 |
Target: 5'- cGAGUGG-CCGUGgaCGGuGUCUUCACg -3' miRNA: 3'- uUUCAUCuGGCGCggGCC-CAGGAGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 110806 | 0.67 | 0.679174 |
Target: 5'- -cGGUAGGCgGCGCgCGGcGUUuuuugCUCACg -3' miRNA: 3'- uuUCAUCUGgCGCGgGCC-CAG-----GAGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 89188 | 0.67 | 0.668986 |
Target: 5'- -cGGUGG-CCGCGCCCgucuuuuuGGGcgCCUgGCu -3' miRNA: 3'- uuUCAUCuGGCGCGGG--------CCCa-GGAgUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 113905 | 0.74 | 0.318297 |
Target: 5'- ----aAGGCgGCGCCgCGGGuUCCUCGCu -3' miRNA: 3'- uuucaUCUGgCGCGG-GCCC-AGGAGUG- -5' |
|||||||
21192 | 3' | -58.7 | NC_004778.3 | + | 115444 | 1.07 | 0.001531 |
Target: 5'- aAAAGUAGACCGCGCCCGGGUCCUCACa -3' miRNA: 3'- -UUUCAUCUGGCGCGGGCCCAGGAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home