miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21194 3' -50.7 NC_004778.3 + 122774 0.66 0.985946
Target:  5'- aUGGACACcauguuugagggcGUGCACCCCaauccgcUGUUGGCc -3'
miRNA:   3'- aAUUUGUGau-----------CGCGUGGGG-------ACAACUG- -5'
21194 3' -50.7 NC_004778.3 + 103387 0.66 0.983471
Target:  5'- --uGGCGCUGGCGC-CCUCgucgUGuUUGGCg -3'
miRNA:   3'- aauUUGUGAUCGCGuGGGG----AC-AACUG- -5'
21194 3' -50.7 NC_004778.3 + 105145 0.66 0.983471
Target:  5'- aUUGGGCGCcgcGGCGCGCU--UGUUGGCu -3'
miRNA:   3'- -AAUUUGUGa--UCGCGUGGggACAACUG- -5'
21194 3' -50.7 NC_004778.3 + 87893 0.66 0.981352
Target:  5'- -gGAAUACUuGCGCACCUgU-UUGACc -3'
miRNA:   3'- aaUUUGUGAuCGCGUGGGgAcAACUG- -5'
21194 3' -50.7 NC_004778.3 + 72361 0.66 0.979036
Target:  5'- gUAAACuGCUcgcuuguacGGCGCAUUCCUGgucagcgUGACa -3'
miRNA:   3'- aAUUUG-UGA---------UCGCGUGGGGACa------ACUG- -5'
21194 3' -50.7 NC_004778.3 + 9903 0.66 0.979036
Target:  5'- --uAGCGCUGGCGCAUUuugggCUUGaUGACg -3'
miRNA:   3'- aauUUGUGAUCGCGUGG-----GGACaACUG- -5'
21194 3' -50.7 NC_004778.3 + 47734 0.67 0.973775
Target:  5'- ----cCGCUGGCGCAagCCUUGU-GGCg -3'
miRNA:   3'- aauuuGUGAUCGCGUg-GGGACAaCUG- -5'
21194 3' -50.7 NC_004778.3 + 81292 0.68 0.956562
Target:  5'- aUAGACACgcacggcGGCGCggauuGCCCCUGUUu-- -3'
miRNA:   3'- aAUUUGUGa------UCGCG-----UGGGGACAAcug -5'
21194 3' -50.7 NC_004778.3 + 36642 0.69 0.90908
Target:  5'- --cGGCGCUGGCGCGCUCCguuccgGUguGCa -3'
miRNA:   3'- aauUUGUGAUCGCGUGGGGa-----CAacUG- -5'
21194 3' -50.7 NC_004778.3 + 37725 0.7 0.888359
Target:  5'- -gAAGCACUcguacuguuGGCGCAgCCCgcuuauuucaaUGUUGGCa -3'
miRNA:   3'- aaUUUGUGA---------UCGCGUgGGG-----------ACAACUG- -5'
21194 3' -50.7 NC_004778.3 + 6826 0.75 0.635522
Target:  5'- -gAAACACcacgacgGGCGC-CCCCUGUgugGACg -3'
miRNA:   3'- aaUUUGUGa------UCGCGuGGGGACAa--CUG- -5'
21194 3' -50.7 NC_004778.3 + 19393 0.8 0.380406
Target:  5'- ---cGC-CUGGCGCACCCCUGUuacgGGCa -3'
miRNA:   3'- aauuUGuGAUCGCGUGGGGACAa---CUG- -5'
21194 3' -50.7 NC_004778.3 + 113078 1.09 0.006121
Target:  5'- aUUAAACACUAGCGCACCCCUGUUGACg -3'
miRNA:   3'- -AAUUUGUGAUCGCGUGGGGACAACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.