Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21195 | 5' | -56 | NC_004778.3 | + | 23870 | 0.93 | 0.028628 |
Target: 5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 24067 | 0.93 | 0.028628 |
Target: 5'- gUACUCGAAAAGCGcGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCuCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 6945 | 0.93 | 0.02633 |
Target: 5'- -uCCCGAAAAGCGAGGUCGGCGCUu- -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGAcu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109404 | 0.93 | 0.025605 |
Target: 5'- -uCCCGAAAAGCGAGGUCGGCGCcGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 122973 | 0.93 | 0.025605 |
Target: 5'- gUACCCGAAAAGCGGGGUUGGCGCcGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 24332 | 0.94 | 0.022898 |
Target: 5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 24133 | 0.94 | 0.022898 |
Target: 5'- gUACUCGAAAcGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUuCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 24199 | 0.94 | 0.022267 |
Target: 5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 24001 | 0.94 | 0.022267 |
Target: 5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 23804 | 0.94 | 0.022267 |
Target: 5'- gUACCaGAAAAGCGGGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGgCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 62817 | 0.96 | 0.016827 |
Target: 5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109626 | 0.96 | 0.016827 |
Target: 5'- -uCUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- auGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 99357 | 0.99 | 0.011042 |
Target: 5'- gUGCCCGAAAAGCGAGGUCGGCGCcGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGaCU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 63011 | 1.01 | 0.007238 |
Target: 5'- gUACUCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109755 | 1.03 | 0.006112 |
Target: 5'- gUACCCGAAAAGCGAGGUCGGCGCUGc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACu -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 6771 | 1.07 | 0.003105 |
Target: 5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 109468 | 1.07 | 0.003105 |
Target: 5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 62880 | 1.07 | 0.003105 |
Target: 5'- gUGCCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 7127 | 1.07 | 0.003105 |
Target: 5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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21195 | 5' | -56 | NC_004778.3 | + | 7029 | 1.07 | 0.003105 |
Target: 5'- gUACCCGAAAAGCGAGGUCGGCGCUGAc -3' miRNA: 3'- -AUGGGCUUUUCGCUCCAGCCGCGACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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