Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21197 | 3' | -53.7 | NC_004778.3 | + | 10662 | 0.68 | 0.858185 |
Target: 5'- uGCGCgCCG-GCCGCgccGCGCccGAAGCg -3' miRNA: 3'- -CGCG-GGCaUGGCGac-CGCGauUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 47711 | 0.68 | 0.858185 |
Target: 5'- cGCGCCgGaUAUCGCaGGCGCcgcuacuAAGCg -3' miRNA: 3'- -CGCGGgC-AUGGCGaCCGCGauu----UUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 850 | 0.68 | 0.881005 |
Target: 5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3' miRNA: 3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 114753 | 0.68 | 0.858185 |
Target: 5'- cGCGUCCGUGuuGCUGucaacguguCGCUGGGAcACa -3' miRNA: 3'- -CGCGGGCAUggCGACc--------GCGAUUUU-UG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 93176 | 0.68 | 0.881005 |
Target: 5'- -gGCCCGcguuguugACCGCguUGGCGCcaAAAAGCc -3' miRNA: 3'- cgCGGGCa-------UGGCG--ACCGCGa-UUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 80131 | 0.68 | 0.881005 |
Target: 5'- gGCGCCgCGUccaaugACCGCgccGCGCUGuucGGCg -3' miRNA: 3'- -CGCGG-GCA------UGGCGac-CGCGAUuu-UUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 931 | 0.68 | 0.881005 |
Target: 5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3' miRNA: 3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 45137 | 0.68 | 0.88815 |
Target: 5'- aGCGaCCCG-GCCGCgcgaaauGCGCUGGAucGCg -3' miRNA: 3'- -CGC-GGGCaUGGCGac-----CGCGAUUUu-UG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 65965 | 0.69 | 0.850135 |
Target: 5'- cCGCCCGcGCCGaagaaGGCGCUuucgccGAACg -3' miRNA: 3'- cGCGGGCaUGGCga---CCGCGAuu----UUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 19374 | 0.69 | 0.841875 |
Target: 5'- cGUGCCCGgaaaccugguCCGcCUGGCGCa------ -3' miRNA: 3'- -CGCGGGCau--------GGC-GACCGCGauuuuug -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 17235 | 0.69 | 0.824757 |
Target: 5'- cGCGgCCGcUAUgCGCgagGGCGCcGAGAACg -3' miRNA: 3'- -CGCgGGC-AUG-GCGa--CCGCGaUUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 80815 | 0.69 | 0.850135 |
Target: 5'- aGCGCUCGUuggaCGCuaUGaCGCUAAAAACu -3' miRNA: 3'- -CGCGGGCAug--GCG--ACcGCGAUUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 106297 | 0.69 | 0.832556 |
Target: 5'- aGCGCCCGUGCCcgccgcagccccaGCcccgguuugauUGcGCGC-AAAGACa -3' miRNA: 3'- -CGCGGGCAUGG-------------CG-----------AC-CGCGaUUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 81460 | 0.69 | 0.824757 |
Target: 5'- uGCGCgCGUGCgCGCguacUGGCGCgugcuuucGAACa -3' miRNA: 3'- -CGCGgGCAUG-GCG----ACCGCGauu-----UUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 123965 | 0.69 | 0.815914 |
Target: 5'- aGCGUCCGUACaCGUUGGCcaUGGcAGGCg -3' miRNA: 3'- -CGCGGGCAUG-GCGACCGcgAUU-UUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 120646 | 0.69 | 0.815914 |
Target: 5'- cGCGCCCGccgccucGCCGCUGaaGCUGcu-GCg -3' miRNA: 3'- -CGCGGGCa------UGGCGACcgCGAUuuuUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 119555 | 0.69 | 0.824757 |
Target: 5'- cGCGCCCGgGCgGCacuuuggcGGCGCguaAGGAGCc -3' miRNA: 3'- -CGCGGGCaUGgCGa-------CCGCGa--UUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 57466 | 0.7 | 0.805983 |
Target: 5'- uGUGCCUGggcaagcUGCCGCUGccGCGCgacggAAAAGCc -3' miRNA: 3'- -CGCGGGC-------AUGGCGAC--CGCGa----UUUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 7549 | 0.7 | 0.806894 |
Target: 5'- gGCGCgCGaauuUGCuUGCUGGCGUUGcAGAACa -3' miRNA: 3'- -CGCGgGC----AUG-GCGACCGCGAU-UUUUG- -5' |
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21197 | 3' | -53.7 | NC_004778.3 | + | 72486 | 0.7 | 0.759461 |
Target: 5'- uGUGCCaaGUGCCGCcgucggUGGCGUUGAGcgucGACg -3' miRNA: 3'- -CGCGGg-CAUGGCG------ACCGCGAUUU----UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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