miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 10662 0.68 0.858185
Target:  5'- uGCGCgCCG-GCCGCgccGCGCccGAAGCg -3'
miRNA:   3'- -CGCG-GGCaUGGCGac-CGCGauUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 114753 0.68 0.858185
Target:  5'- cGCGUCCGUGuuGCUGucaacguguCGCUGGGAcACa -3'
miRNA:   3'- -CGCGGGCAUggCGACc--------GCGAUUUU-UG- -5'
21197 3' -53.7 NC_004778.3 + 47711 0.68 0.858185
Target:  5'- cGCGCCgGaUAUCGCaGGCGCcgcuacuAAGCg -3'
miRNA:   3'- -CGCGGgC-AUGGCGaCCGCGauu----UUUG- -5'
21197 3' -53.7 NC_004778.3 + 931 0.68 0.881005
Target:  5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3'
miRNA:   3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 850 0.68 0.881005
Target:  5'- aUGCCCGccgACaaaGUUGGCGCUGc-AGCa -3'
miRNA:   3'- cGCGGGCa--UGg--CGACCGCGAUuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 80131 0.68 0.881005
Target:  5'- gGCGCCgCGUccaaugACCGCgccGCGCUGuucGGCg -3'
miRNA:   3'- -CGCGG-GCA------UGGCGac-CGCGAUuu-UUG- -5'
21197 3' -53.7 NC_004778.3 + 93176 0.68 0.881005
Target:  5'- -gGCCCGcguuguugACCGCguUGGCGCcaAAAAGCc -3'
miRNA:   3'- cgCGGGCa-------UGGCG--ACCGCGa-UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 45137 0.68 0.88815
Target:  5'- aGCGaCCCG-GCCGCgcgaaauGCGCUGGAucGCg -3'
miRNA:   3'- -CGC-GGGCaUGGCGac-----CGCGAUUUu-UG- -5'
21197 3' -53.7 NC_004778.3 + 34759 0.67 0.894375
Target:  5'- aGUGUUCG-ACCGUUcGGCGCUuaacuacGAGGACa -3'
miRNA:   3'- -CGCGGGCaUGGCGA-CCGCGA-------UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 120976 0.67 0.895055
Target:  5'- cGCGCCCGcUGCC-CcGGCGCcgccuuUAAuuACg -3'
miRNA:   3'- -CGCGGGC-AUGGcGaCCGCG------AUUuuUG- -5'
21197 3' -53.7 NC_004778.3 + 64161 0.67 0.895055
Target:  5'- cGCGCCCGUgGCCGCcga-GCUu--GACg -3'
miRNA:   3'- -CGCGGGCA-UGGCGaccgCGAuuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 79606 0.67 0.895055
Target:  5'- cGCGCCCGUGCgggGCccaGUGCUuuacGGAAACa -3'
miRNA:   3'- -CGCGGGCAUGg--CGac-CGCGA----UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 57952 0.67 0.895055
Target:  5'- cGCGCCUGcGCugCGCUGGCuGC--AAAGCc -3'
miRNA:   3'- -CGCGGGCaUG--GCGACCG-CGauUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 56495 0.67 0.901716
Target:  5'- uGCGCCUGagcACCGC--GCGCUAGcuuGGCg -3'
miRNA:   3'- -CGCGGGCa--UGGCGacCGCGAUUu--UUG- -5'
21197 3' -53.7 NC_004778.3 + 91791 0.67 0.901716
Target:  5'- aGCGCCCGUG-CGCaucGUGUUGAcAACa -3'
miRNA:   3'- -CGCGGGCAUgGCGac-CGCGAUUuUUG- -5'
21197 3' -53.7 NC_004778.3 + 76639 0.67 0.901716
Target:  5'- gGCGgCCGgaacgGCCGCucgguaauUGGCGCcGAAAccGCg -3'
miRNA:   3'- -CGCgGGCa----UGGCG--------ACCGCGaUUUU--UG- -5'
21197 3' -53.7 NC_004778.3 + 39189 0.67 0.901716
Target:  5'- uCGCCCGcUACggucaUGCaGGCGCUAAGcGACu -3'
miRNA:   3'- cGCGGGC-AUG-----GCGaCCGCGAUUU-UUG- -5'
21197 3' -53.7 NC_004778.3 + 45619 0.67 0.908129
Target:  5'- cGCGCCCucgUCGCcGGCGUUGAGu-- -3'
miRNA:   3'- -CGCGGGcauGGCGaCCGCGAUUUuug -5'
21197 3' -53.7 NC_004778.3 + 97314 0.67 0.908129
Target:  5'- aGCGCCguCGUGCa---GGCGCUGAAGGa -3'
miRNA:   3'- -CGCGG--GCAUGgcgaCCGCGAUUUUUg -5'
21197 3' -53.7 NC_004778.3 + 106858 0.67 0.908129
Target:  5'- -aGaaaCCGUACCGCcgacgcccUGGCGUUAAAGc- -3'
miRNA:   3'- cgCg--GGCAUGGCG--------ACCGCGAUUUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.