miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 3' -53.7 NC_004778.3 + 71444 0.67 0.925861
Target:  5'- uGCGCUCGUugCGCa-GCGUcaacuGAAACg -3'
miRNA:   3'- -CGCGGGCAugGCGacCGCGau---UUUUG- -5'
21197 3' -53.7 NC_004778.3 + 55984 0.67 0.920204
Target:  5'- cGCGCUCGgacaguggcGCCGCguUGGCGUcGAuuAGACa -3'
miRNA:   3'- -CGCGGGCa--------UGGCG--ACCGCGaUU--UUUG- -5'
21197 3' -53.7 NC_004778.3 + 87995 0.67 0.920204
Target:  5'- aGCGCCCGUucaaACUGUgcGCGCUcAGAcuGCa -3'
miRNA:   3'- -CGCGGGCA----UGGCGacCGCGAuUUU--UG- -5'
21197 3' -53.7 NC_004778.3 + 25881 0.67 0.920204
Target:  5'- uGUGCCgGcgcgACCGUgGGCGCUGGc--- -3'
miRNA:   3'- -CGCGGgCa---UGGCGaCCGCGAUUuuug -5'
21197 3' -53.7 NC_004778.3 + 17861 0.67 0.914292
Target:  5'- cGCGCgCCGU-CCGUgacuuUGGCGCg------ -3'
miRNA:   3'- -CGCG-GGCAuGGCG-----ACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 103377 0.67 0.914292
Target:  5'- uCGCCUuugGUGgCGCUGGCGCc------ -3'
miRNA:   3'- cGCGGG---CAUgGCGACCGCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 94675 0.67 0.913687
Target:  5'- cGCGCgggcgaaUCGUACUGCUucGCGCUGAaccgcGAGCg -3'
miRNA:   3'- -CGCG-------GGCAUGGCGAc-CGCGAUU-----UUUG- -5'
21197 3' -53.7 NC_004778.3 + 106858 0.67 0.908129
Target:  5'- -aGaaaCCGUACCGCcgacgcccUGGCGUUAAAGc- -3'
miRNA:   3'- cgCg--GGCAUGGCG--------ACCGCGAUUUUug -5'
21197 3' -53.7 NC_004778.3 + 97314 0.67 0.908129
Target:  5'- aGCGCCguCGUGCa---GGCGCUGAAGGa -3'
miRNA:   3'- -CGCGG--GCAUGgcgaCCGCGAUUUUUg -5'
21197 3' -53.7 NC_004778.3 + 127755 0.67 0.908129
Target:  5'- uGCGCCUGcucgcGCUGCUGGcCGCa------ -3'
miRNA:   3'- -CGCGGGCa----UGGCGACC-GCGauuuuug -5'
21197 3' -53.7 NC_004778.3 + 45619 0.67 0.908129
Target:  5'- cGCGCCCucgUCGCcGGCGUUGAGu-- -3'
miRNA:   3'- -CGCGGGcauGGCGaCCGCGAUUUuug -5'
21197 3' -53.7 NC_004778.3 + 76639 0.67 0.901716
Target:  5'- gGCGgCCGgaacgGCCGCucgguaauUGGCGCcGAAAccGCg -3'
miRNA:   3'- -CGCgGGCa----UGGCG--------ACCGCGaUUUU--UG- -5'
21197 3' -53.7 NC_004778.3 + 91791 0.67 0.901716
Target:  5'- aGCGCCCGUG-CGCaucGUGUUGAcAACa -3'
miRNA:   3'- -CGCGGGCAUgGCGac-CGCGAUUuUUG- -5'
21197 3' -53.7 NC_004778.3 + 56495 0.67 0.901716
Target:  5'- uGCGCCUGagcACCGC--GCGCUAGcuuGGCg -3'
miRNA:   3'- -CGCGGGCa--UGGCGacCGCGAUUu--UUG- -5'
21197 3' -53.7 NC_004778.3 + 39189 0.67 0.901716
Target:  5'- uCGCCCGcUACggucaUGCaGGCGCUAAGcGACu -3'
miRNA:   3'- cGCGGGC-AUG-----GCGaCCGCGAUUU-UUG- -5'
21197 3' -53.7 NC_004778.3 + 79606 0.67 0.895055
Target:  5'- cGCGCCCGUGCgggGCccaGUGCUuuacGGAAACa -3'
miRNA:   3'- -CGCGGGCAUGg--CGac-CGCGA----UUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 120976 0.67 0.895055
Target:  5'- cGCGCCCGcUGCC-CcGGCGCcgccuuUAAuuACg -3'
miRNA:   3'- -CGCGGGC-AUGGcGaCCGCG------AUUuuUG- -5'
21197 3' -53.7 NC_004778.3 + 64161 0.67 0.895055
Target:  5'- cGCGCCCGUgGCCGCcga-GCUu--GACg -3'
miRNA:   3'- -CGCGGGCA-UGGCGaccgCGAuuuUUG- -5'
21197 3' -53.7 NC_004778.3 + 57952 0.67 0.895055
Target:  5'- cGCGCCUGcGCugCGCUGGCuGC--AAAGCc -3'
miRNA:   3'- -CGCGGGCaUG--GCGACCG-CGauUUUUG- -5'
21197 3' -53.7 NC_004778.3 + 34759 0.67 0.894375
Target:  5'- aGUGUUCG-ACCGUUcGGCGCUuaacuacGAGGACa -3'
miRNA:   3'- -CGCGGGCaUGGCGA-CCGCGA-------UUUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.