miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21197 5' -59.4 NC_004778.3 + 57130 0.66 0.711128
Target:  5'- uGGGCCCCGACGgaACGGGaGAcGUGc -3'
miRNA:   3'- uUCUGGGGUUGCggUGCCCgCUuCGC- -5'
21197 5' -59.4 NC_004778.3 + 59937 0.66 0.711128
Target:  5'- cGGACCCCAuCGCCGCugaaauGGCGcuuGUGu -3'
miRNA:   3'- uUCUGGGGUuGCGGUGc-----CCGCuu-CGC- -5'
21197 5' -59.4 NC_004778.3 + 98358 0.66 0.701177
Target:  5'- cAGACgCgCAccGCGCC-CGGGCGcAGCa -3'
miRNA:   3'- uUCUGgG-GU--UGCGGuGCCCGCuUCGc -5'
21197 5' -59.4 NC_004778.3 + 99016 0.66 0.701177
Target:  5'- cGGGugCCgCAACGCC-CGGcaacGCGucGCGg -3'
miRNA:   3'- -UUCugGG-GUUGCGGuGCC----CGCuuCGC- -5'
21197 5' -59.4 NC_004778.3 + 90241 0.67 0.671014
Target:  5'- cGAGuCgCUUAGCGCCugcaugaccguaGCGGGCGAcGCGg -3'
miRNA:   3'- -UUCuG-GGGUUGCGG------------UGCCCGCUuCGC- -5'
21197 5' -59.4 NC_004778.3 + 93672 0.67 0.64057
Target:  5'- cAGACCgCCAAccaaguugucCGCCAgcuCGGGCGAuugguacaaAGCGu -3'
miRNA:   3'- uUCUGG-GGUU----------GCGGU---GCCCGCU---------UCGC- -5'
21197 5' -59.4 NC_004778.3 + 10820 0.68 0.599919
Target:  5'- cGAGGCUUauuuaaaaAGCGCCugGGGCGcguuGCGa -3'
miRNA:   3'- -UUCUGGGg-------UUGCGGugCCCGCuu--CGC- -5'
21197 5' -59.4 NC_004778.3 + 26063 0.7 0.500811
Target:  5'- gAGGGCgCCAGCGCCACcaaaGGCGAucugauGCa -3'
miRNA:   3'- -UUCUGgGGUUGCGGUGc---CCGCUu-----CGc -5'
21197 5' -59.4 NC_004778.3 + 54610 0.7 0.491262
Target:  5'- -cGGCgCCCAcCGaCUACGGGCGcaAGGCGg -3'
miRNA:   3'- uuCUG-GGGUuGC-GGUGCCCGC--UUCGC- -5'
21197 5' -59.4 NC_004778.3 + 22572 0.7 0.491262
Target:  5'- -cGGCUUUAACGCCA-GGGCGucGGCGg -3'
miRNA:   3'- uuCUGGGGUUGCGGUgCCCGCu-UCGC- -5'
21197 5' -59.4 NC_004778.3 + 98836 0.71 0.435886
Target:  5'- ----gCCCAAUGCCACGGaGCGcGGCa -3'
miRNA:   3'- uucugGGGUUGCGGUGCC-CGCuUCGc -5'
21197 5' -59.4 NC_004778.3 + 52829 0.73 0.307751
Target:  5'- uGGACCCCGACGCCAUGccGGCGcugauuguGCa -3'
miRNA:   3'- uUCUGGGGUUGCGGUGC--CCGCuu------CGc -5'
21197 5' -59.4 NC_004778.3 + 114358 0.85 0.053109
Target:  5'- -uGACCCUGcGCGCCGCGGGCGAGGCc -3'
miRNA:   3'- uuCUGGGGU-UGCGGUGCCCGCUUCGc -5'
21197 5' -59.4 NC_004778.3 + 107069 1.07 0.001583
Target:  5'- gAAGACCCCAACGCCACGGGCGAAGCGa -3'
miRNA:   3'- -UUCUGGGGUUGCGGUGCCCGCUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.