miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21198 3' -54.1 NC_004778.3 + 56173 0.66 0.941112
Target:  5'- cGCUGGGcGCguuGGGCgaucGCACGcccuGGUCGUAa -3'
miRNA:   3'- -UGACCC-CG---CCUGa---UGUGCu---UUAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 98910 0.66 0.9257
Target:  5'- gUUGGGGCGGcCUuuaACGCGcagaccGAUCGUg -3'
miRNA:   3'- uGACCCCGCCuGA---UGUGCu-----UUAGCGu -5'
21198 3' -54.1 NC_004778.3 + 30649 0.67 0.914169
Target:  5'- --cGGGGuCGGACcGCGUGuuGUCGCGu -3'
miRNA:   3'- ugaCCCC-GCCUGaUGUGCuuUAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 63935 0.67 0.895004
Target:  5'- gACUGcGGGUGcuGACUgaauACGCGAAG-CGCAc -3'
miRNA:   3'- -UGAC-CCCGC--CUGA----UGUGCUUUaGCGU- -5'
21198 3' -54.1 NC_004778.3 + 44400 0.68 0.881014
Target:  5'- --cGucGCaGACUACACGAGAUUGCAc -3'
miRNA:   3'- ugaCccCGcCUGAUGUGCUUUAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 75151 0.69 0.807258
Target:  5'- cGCcGGGGCGGGCUcACugGc---CGCAg -3'
miRNA:   3'- -UGaCCCCGCCUGA-UGugCuuuaGCGU- -5'
21198 3' -54.1 NC_004778.3 + 118422 0.69 0.798117
Target:  5'- uUUGGGuGCGGGUUGCACGGcgcgccuguAUCGCAa -3'
miRNA:   3'- uGACCC-CGCCUGAUGUGCUu--------UAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 125345 0.7 0.740286
Target:  5'- cGCUGGGuauaaguaCGGGCUGCGCGAucUUGUAa -3'
miRNA:   3'- -UGACCCc-------GCCUGAUGUGCUuuAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 23141 0.71 0.709896
Target:  5'- gGCUGGGGCuGcGGCggGCACGGgcgcugacGAUUGCAg -3'
miRNA:   3'- -UGACCCCG-C-CUGa-UGUGCU--------UUAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 9011 0.73 0.605515
Target:  5'- --gGGcGGCGGGCUGCAUuu-GUCGCAg -3'
miRNA:   3'- ugaCC-CCGCCUGAUGUGcuuUAGCGU- -5'
21198 3' -54.1 NC_004778.3 + 106518 1.08 0.004092
Target:  5'- aACUGGGGCGGACUACACGAAAUCGCAc -3'
miRNA:   3'- -UGACCCCGCCUGAUGUGCUUUAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.