miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21198 5' -52.4 NC_004778.3 + 32832 0.66 0.953896
Target:  5'- ----aGUUUCGgaCGCGGCuGGCCUa -3'
miRNA:   3'- aaaagUAAAGCaaGCGUCGcCCGGGc -5'
21198 5' -52.4 NC_004778.3 + 96345 0.67 0.949643
Target:  5'- -gUUCAUguaCGUguagcgCgGCAGCGGGCCg- -3'
miRNA:   3'- aaAAGUAaa-GCAa-----G-CGUCGCCCGGgc -5'
21198 5' -52.4 NC_004778.3 + 118774 0.67 0.945138
Target:  5'- ---aCGcUUCGggCGCGGCGcGGCCgGc -3'
miRNA:   3'- aaaaGUaAAGCaaGCGUCGC-CCGGgC- -5'
21198 5' -52.4 NC_004778.3 + 46691 0.67 0.930073
Target:  5'- -cUUCGgcgUCGgaauUCGCGGCGGGgggaCCGu -3'
miRNA:   3'- aaAAGUaa-AGCa---AGCGUCGCCCg---GGC- -5'
21198 5' -52.4 NC_004778.3 + 107142 0.68 0.899756
Target:  5'- ---cCAUgUCGUUgGUGGCGGGCgCGc -3'
miRNA:   3'- aaaaGUAaAGCAAgCGUCGCCCGgGC- -5'
21198 5' -52.4 NC_004778.3 + 91299 0.7 0.846849
Target:  5'- --gUCGag-CGg-CGCAGCGGGCCUGc -3'
miRNA:   3'- aaaAGUaaaGCaaGCGUCGCCCGGGC- -5'
21198 5' -52.4 NC_004778.3 + 14753 0.7 0.838383
Target:  5'- -------cUCGUUauauaGCAGCGGGCCUa -3'
miRNA:   3'- aaaaguaaAGCAAg----CGUCGCCCGGGc -5'
21198 5' -52.4 NC_004778.3 + 106555 1.07 0.006811
Target:  5'- aUUUUCAUUUCGUUCGCAGCGGGCCCGu -3'
miRNA:   3'- -AAAAGUAAAGCAAGCGUCGCCCGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.