Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 122315 | 0.87 | 0.113408 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122249 | 0.88 | 0.089432 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 66431 | 0.88 | 0.089432 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122500 | 0.89 | 0.082569 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105309 | 0.91 | 0.059833 |
Target: 5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105110 | 0.91 | 0.059833 |
Target: 5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105507 | 0.91 | 0.059833 |
Target: 5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122562 | 0.97 | 0.023653 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 19688 | 0.97 | 0.023653 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 122672 | 0.97 | 0.023653 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105176 | 1.03 | 0.010046 |
Target: 5'- gCGCCGACCGCGCuUUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGCGCG-AAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105573 | 1.1 | 0.003498 |
Target: 5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105375 | 1.1 | 0.003498 |
Target: 5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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