miRNA display CGI


Results 41 - 60 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21199 5' -54.7 NC_004778.3 + 85452 0.73 0.601131
Target:  5'- cCGCCGGCCGCGCg--UUGGGcgGCGc- -3'
miRNA:   3'- -GCGGCUGGCGCGaaaAGCUCa-UGCcc -5'
21199 5' -54.7 NC_004778.3 + 91227 0.68 0.879883
Target:  5'- gGCCGugCGCaGCga--CGAGUACGcGa -3'
miRNA:   3'- gCGGCugGCG-CGaaaaGCUCAUGC-Cc -5'
21199 5' -54.7 NC_004778.3 + 92732 0.69 0.849816
Target:  5'- gCGCCGGCggugCGCGuCUUggCGAGcGCGGu -3'
miRNA:   3'- -GCGGCUG----GCGC-GAAaaGCUCaUGCCc -5'
21199 5' -54.7 NC_004778.3 + 93041 0.66 0.929217
Target:  5'- gGUCGGCCGCGUgga-CGGcgAUGGGg -3'
miRNA:   3'- gCGGCUGGCGCGaaaaGCUcaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 94956 0.68 0.879883
Target:  5'- uGCCGGCCGCGCacggucCGAG-ACGc- -3'
miRNA:   3'- gCGGCUGGCGCGaaaa--GCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 95790 0.69 0.825171
Target:  5'- gCGCCGGCCGCGCUg--CGccc-CGuGGa -3'
miRNA:   3'- -GCGGCUGGCGCGAaaaGCucauGC-CC- -5'
21199 5' -54.7 NC_004778.3 + 105044 0.83 0.19918
Target:  5'- aCGCCGACCGUGCUUUUCuGGUACa-- -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGcUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 105110 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105176 1.03 0.010046
Target:  5'- gCGCCGACCGCGCuUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCG-AAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105243 0.78 0.383941
Target:  5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 105309 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105375 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105441 0.78 0.383941
Target:  5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 105466 0.66 0.943802
Target:  5'- gGCCGAucCCGCGCc--UCGgacggaAGcGCGGGa -3'
miRNA:   3'- gCGGCU--GGCGCGaaaAGC------UCaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105507 0.91 0.059833
Target:  5'- gCGCCGACCuCGCgUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGcGCGaAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105573 1.1 0.003498
Target:  5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3'
miRNA:   3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 105639 0.78 0.383941
Target:  5'- gCGCCGACCcCGCUUUUCuGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGcUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 109422 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 109578 0.67 0.908876
Target:  5'- gCGCCGACgcaCGUuuaaagauagcacucGCUUUUCGGGUACa-- -3'
miRNA:   3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 111982 0.71 0.731899
Target:  5'- gGCCaGGCUGCGCgagaUUUCGcAGUugaaacgGCGGGg -3'
miRNA:   3'- gCGG-CUGGCGCGa---AAAGC-UCA-------UGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.