miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21199 5' -54.7 NC_004778.3 + 122153 0.75 0.520767
Target:  5'- gCGCCGACCuuGCUUUUCaAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGcUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122190 0.86 0.132605
Target:  5'- gCGCCGACCuuGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122315 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122413 0.87 0.113408
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122468 0.69 0.833572
Target:  5'- gCGCCGACCuuGCUUUUUGA-UACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUcAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122500 0.89 0.082569
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 122562 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 122624 0.71 0.732881
Target:  5'- gCGCCGACCuCGCUUUUcucgaaaagCGAGUGCu-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAA---------GCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 124816 0.68 0.872684
Target:  5'- gCGCCGACCcCGCUUUUa-AGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgcUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 124938 0.73 0.611351
Target:  5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 125725 0.71 0.71308
Target:  5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3'
miRNA:   3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.