Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 66431 | 0.88 | 0.089432 |
Target: 5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62769 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62703 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62578 | 0.68 | 0.884791 |
Target: 5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 61303 | 0.69 | 0.849816 |
Target: 5'- uCGCCGA-CGUGCga---GAGUACGGc -3' miRNA: 3'- -GCGGCUgGCGCGaaaagCUCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 50080 | 0.69 | 0.849816 |
Target: 5'- gGCacaGACCGCGCga-UCGAuauaccacgGCGGGg -3' miRNA: 3'- gCGg--CUGGCGCGaaaAGCUca-------UGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 42642 | 0.68 | 0.886861 |
Target: 5'- cCGCCGACgGUGCa---CGAGUGCa-- -3' miRNA: 3'- -GCGGCUGgCGCGaaaaGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 41691 | 0.66 | 0.94819 |
Target: 5'- aGUCGAUgGCGCgggcaUUG-GUAUGGGg -3' miRNA: 3'- gCGGCUGgCGCGaaa--AGCuCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 38786 | 0.71 | 0.732881 |
Target: 5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 34503 | 0.66 | 0.938703 |
Target: 5'- cCGCCGACuCGCGCUaccgcgugcugcUUauguccaUCaAGUGCGGcGg -3' miRNA: 3'- -GCGGCUG-GCGCGA------------AA-------AGcUCAUGCC-C- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 34313 | 0.66 | 0.943802 |
Target: 5'- uGCCGGCgCGUGCUggaaCuGGUGCaGGGc -3' miRNA: 3'- gCGGCUG-GCGCGAaaa-GcUCAUG-CCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 33966 | 0.66 | 0.943802 |
Target: 5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3' miRNA: 3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 30085 | 0.78 | 0.351667 |
Target: 5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 30027 | 0.8 | 0.273133 |
Target: 5'- gCGCCGACCuCGCUUUcCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAaGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29961 | 0.85 | 0.139644 |
Target: 5'- gCGCCGACCcUGCUUUUCGAGUACGa- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29857 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29791 | 0.72 | 0.672721 |
Target: 5'- gCGCCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29659 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29527 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 28597 | 0.7 | 0.789889 |
Target: 5'- uGUCGuuUGCGCguggcgUCGAcGUGCGGGg -3' miRNA: 3'- gCGGCugGCGCGaaa---AGCU-CAUGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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