miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21199 5' -54.7 NC_004778.3 + 122672 0.97 0.023653
Target:  5'- gCGCCGACCuCGCUUUUCGGGUACGGGu -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 66628 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19819 0.79 0.321365
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 66431 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 122249 0.88 0.089432
Target:  5'- gCGCCGACCuCGCUUUUCGAGUACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 66760 0.68 0.886861
Target:  5'- gCGCCGACCuCaCUUUUCGAGaACGu- -3'
miRNA:   3'- -GCGGCUGGcGcGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19919 0.79 0.336267
Target:  5'- gCGCCGACCuCGCUUUUCGAGaACGc- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 19754 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGcACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5'
21199 5' -54.7 NC_004778.3 + 124816 0.68 0.872684
Target:  5'- gCGCCGACCcCGCUUUUa-AGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgcUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 12746 0.69 0.841789
Target:  5'- gCGCCGAUUcCGCUgucgggCGAGcUugGGGa -3'
miRNA:   3'- -GCGGCUGGcGCGAaaa---GCUC-AugCCC- -5'
21199 5' -54.7 NC_004778.3 + 66878 0.69 0.841789
Target:  5'- gCGUCGgcGCCGUuuuUUUUUCGAGUACGGc -3'
miRNA:   3'- -GCGGC--UGGCGc--GAAAAGCUCAUGCCc -5'
21199 5' -54.7 NC_004778.3 + 122468 0.69 0.833572
Target:  5'- gCGCCGACCuuGCUUUUUGA-UACGa- -3'
miRNA:   3'- -GCGGCUGGcgCGAAAAGCUcAUGCcc -5'
21199 5' -54.7 NC_004778.3 + 95790 0.69 0.825171
Target:  5'- gCGCCGGCCGCGCUg--CGccc-CGuGGa -3'
miRNA:   3'- -GCGGCUGGCGCGAaaaGCucauGC-CC- -5'
21199 5' -54.7 NC_004778.3 + 10260 0.7 0.77136
Target:  5'- gCGCCGAUUGCGCg---CGGGaccgGCGGc -3'
miRNA:   3'- -GCGGCUGGCGCGaaaaGCUCa---UGCCc -5'
21199 5' -54.7 NC_004778.3 + 28597 0.7 0.789889
Target:  5'- uGUCGuuUGCGCguggcgUCGAcGUGCGGGg -3'
miRNA:   3'- gCGGCugGCGCGaaa---AGCU-CAUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 122624 0.71 0.732881
Target:  5'- gCGCCGACCuCGCUUUUcucgaaaagCGAGUGCu-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAA---------GCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 125725 0.71 0.71308
Target:  5'- aCGCCGaaauGCCGCGCg--UUG-GUACGGc -3'
miRNA:   3'- -GCGGC----UGGCGCGaaaAGCuCAUGCCc -5'
21199 5' -54.7 NC_004778.3 + 4972 0.72 0.651285
Target:  5'- gCGCCGcgacauuGCCacGCGCguugUUUCGAGaACGGGu -3'
miRNA:   3'- -GCGGC-------UGG--CGCGa---AAAGCUCaUGCCC- -5'
21199 5' -54.7 NC_004778.3 + 124938 0.73 0.611351
Target:  5'- gCGCCGACCcCGCUUUU-GAGUACa-- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAgCUCAUGccc -5'
21199 5' -54.7 NC_004778.3 + 20040 0.78 0.351667
Target:  5'- gCGCCGACCuCGCUUUUCGGGaACGa- -3'
miRNA:   3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.