Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21199 | 5' | -54.7 | NC_004778.3 | + | 41691 | 0.66 | 0.94819 |
Target: 5'- aGUCGAUgGCGCgggcaUUG-GUAUGGGg -3' miRNA: 3'- gCGGCUGgCGCGaaa--AGCuCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6670 | 0.7 | 0.77136 |
Target: 5'- gCGCCGACUcCaCUUUUCGAGUACa-- -3' miRNA: 3'- -GCGGCUGGcGcGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 38786 | 0.71 | 0.732881 |
Target: 5'- gCGUCGACCGCGCUgacgUUGAcggcGUGCGc- -3' miRNA: 3'- -GCGGCUGGCGCGAaa--AGCU----CAUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 105375 | 1.1 | 0.003498 |
Target: 5'- gCGCCGACCGCGCUUUUCGAGUACGGGc -3' miRNA: 3'- -GCGGCUGGCGCGAAAAGCUCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 10665 | 0.67 | 0.918299 |
Target: 5'- gCGCCGGCCGCGCcgcgccCGAa-GCGuGGc -3' miRNA: 3'- -GCGGCUGGCGCGaaaa--GCUcaUGC-CC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 109578 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUuuaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62769 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62703 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 62578 | 0.68 | 0.884791 |
Target: 5'- gCGCCGACgccuaaagauagcaCuCGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG--------------GcGCGAAAAGCUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 80132 | 0.69 | 0.83107 |
Target: 5'- gCGCCGcguccaaugaccgcGCCGCGCUgUUCGgcgacaagagcGGUAUGGa -3' miRNA: 3'- -GCGGC--------------UGGCGCGAaAAGC-----------UCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 92732 | 0.69 | 0.849816 |
Target: 5'- gCGCCGGCggugCGCGuCUUggCGAGcGCGGu -3' miRNA: 3'- -GCGGCUG----GCGC-GAAaaGCUCaUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29527 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 33966 | 0.66 | 0.943802 |
Target: 5'- uGCCGGCCaaCGaaaUUUCGgucacgucggGGUGCGGGg -3' miRNA: 3'- gCGGCUGGc-GCga-AAAGC----------UCAUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 61303 | 0.69 | 0.849816 |
Target: 5'- uCGCCGA-CGUGCga---GAGUACGGc -3' miRNA: 3'- -GCGGCUgGCGCGaaaagCUCAUGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 6552 | 0.66 | 0.934317 |
Target: 5'- gCGCCGACCcCGCUUUcCaAGUACa-- -3' miRNA: 3'- -GCGGCUGGcGCGAAAaGcUCAUGccc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 29659 | 0.67 | 0.906426 |
Target: 5'- gCGUCGACCcUGCUUUUUGAGaACGu- -3' miRNA: 3'- -GCGGCUGGcGCGAAAAGCUCaUGCcc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 50080 | 0.69 | 0.849816 |
Target: 5'- gGCacaGACCGCGCga-UCGAuauaccacgGCGGGg -3' miRNA: 3'- gCGg--CUGGCGCGaaaAGCUca-------UGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 80525 | 0.71 | 0.742655 |
Target: 5'- gCGCCGACCuCGUg-UUCGAGU-CGGa -3' miRNA: 3'- -GCGGCUGGcGCGaaAAGCUCAuGCCc -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 93041 | 0.66 | 0.929217 |
Target: 5'- gGUCGGCCGCGUgga-CGGcgAUGGGg -3' miRNA: 3'- gCGGCUGGCGCGaaaaGCUcaUGCCC- -5' |
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21199 | 5' | -54.7 | NC_004778.3 | + | 109422 | 0.67 | 0.908876 |
Target: 5'- gCGCCGACgcaCGUccaaagauagcacucGCUUUUCGGGUACa-- -3' miRNA: 3'- -GCGGCUG---GCG---------------CGAAAAGCUCAUGccc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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