miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21200 3' -50.2 NC_004778.3 + 44063 0.66 0.991519
Target:  5'- cGGGCGUUUgCGgc-GGCG-AUGUCAu -3'
miRNA:   3'- -CCCGCAAGaGCauuUCGCuUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 44093 0.66 0.991519
Target:  5'- cGGGCGUUUgCGgc-GGCG-AUGUCAu -3'
miRNA:   3'- -CCCGCAAGaGCauuUCGCuUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 66522 0.66 0.990257
Target:  5'- --aCGUUUUUGaAAAGCGAGUGCUAu -3'
miRNA:   3'- cccGCAAGAGCaUUUCGCUUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 44153 0.66 0.990257
Target:  5'- cGGGCGUUUgCGgc-GGCGAcgGCa-- -3'
miRNA:   3'- -CCCGCAAGaGCauuUCGCUuaCGguu -5'
21200 3' -50.2 NC_004778.3 + 44123 0.66 0.990257
Target:  5'- cGGGCGUUUgCGgc-GGCGAcgGCa-- -3'
miRNA:   3'- -CCCGCAAGaGCauuUCGCUuaCGguu -5'
21200 3' -50.2 NC_004778.3 + 109613 0.67 0.985572
Target:  5'- cGGGUacagacGUUCUCGaAAAGCGAG-GUCGg -3'
miRNA:   3'- -CCCG------CAAGAGCaUUUCGCUUaCGGUu -5'
21200 3' -50.2 NC_004778.3 + 62804 0.67 0.985572
Target:  5'- cGGGUacagacGUUCUCGaAAAGCGAG-GUCGg -3'
miRNA:   3'- -CCCG------CAAGAGCaUUUCGCUUaCGGUu -5'
21200 3' -50.2 NC_004778.3 + 113787 0.67 0.983679
Target:  5'- aGGCGUUgUgCGUGaaccGAGCuGAUGCCGGg -3'
miRNA:   3'- cCCGCAAgA-GCAU----UUCGcUUACGGUU- -5'
21200 3' -50.2 NC_004778.3 + 19991 0.67 0.981603
Target:  5'- cGGGCacgUCUguaccCGaAAAGCGAGUGCUAu -3'
miRNA:   3'- -CCCGca-AGA-----GCaUUUCGCUUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 61111 0.67 0.979335
Target:  5'- -cGCGUUCUCGUu--GCGAAcGuCCAGc -3'
miRNA:   3'- ccCGCAAGAGCAuuuCGCUUaC-GGUU- -5'
21200 3' -50.2 NC_004778.3 + 102808 0.68 0.974186
Target:  5'- uGGGCGgaaUUGUAcAGCGAcagcgugcacGUGCCGu -3'
miRNA:   3'- -CCCGCaagAGCAUuUCGCU----------UACGGUu -5'
21200 3' -50.2 NC_004778.3 + 122623 0.68 0.971288
Target:  5'- -aGCGccgaccucgcuuUUCUCGaAAAGCGAGUGCUAu -3'
miRNA:   3'- ccCGC------------AAGAGCaUUUCGCUUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 36323 0.69 0.953259
Target:  5'- aGGGCGUggUCGUAccGGGCGucAUGUCGc -3'
miRNA:   3'- -CCCGCAagAGCAU--UUCGCu-UACGGUu -5'
21200 3' -50.2 NC_004778.3 + 62738 0.7 0.910961
Target:  5'- cGGGUacagacGUUCUCGaAAAGCGAGgucggcGCCGAc -3'
miRNA:   3'- -CCCG------CAAGAGCaUUUCGCUUa-----CGGUU- -5'
21200 3' -50.2 NC_004778.3 + 56425 0.71 0.889983
Target:  5'- uGGGCGaggaCUCGUuGAGCGAGuuaagguuuaauuUGCCAu -3'
miRNA:   3'- -CCCGCaa--GAGCAuUUCGCUU-------------ACGGUu -5'
21200 3' -50.2 NC_004778.3 + 30156 0.73 0.798054
Target:  5'- -aGCGUUCUCGaAAAGCGAGcGCUAu -3'
miRNA:   3'- ccCGCAAGAGCaUUUCGCUUaCGGUu -5'
21200 3' -50.2 NC_004778.3 + 109521 0.74 0.758658
Target:  5'- -aGCGUUCUCGaAAAGCGAGgucggcGCCGAc -3'
miRNA:   3'- ccCGCAAGAGCaUUUCGCUUa-----CGGUU- -5'
21200 3' -50.2 NC_004778.3 + 66587 0.82 0.337225
Target:  5'- -aGCGUUCUCGaAAAGCGAGUGCUAu -3'
miRNA:   3'- ccCGCAAGAGCaUUUCGCUUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 66456 0.82 0.337225
Target:  5'- -aGCGUUCUCGaAAAGCGAGUGCUAu -3'
miRNA:   3'- ccCGCAAGAGCaUUUCGCUUACGGUu -5'
21200 3' -50.2 NC_004778.3 + 122585 0.9 0.11861
Target:  5'- cGGGUGUUCUCGaAAAGCGAGUGCUAu -3'
miRNA:   3'- -CCCGCAAGAGCaUUUCGCUUACGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.