Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21200 | 3' | -50.2 | NC_004778.3 | + | 44093 | 0.66 | 0.991519 |
Target: 5'- cGGGCGUUUgCGgc-GGCG-AUGUCAu -3' miRNA: 3'- -CCCGCAAGaGCauuUCGCuUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 44063 | 0.66 | 0.991519 |
Target: 5'- cGGGCGUUUgCGgc-GGCG-AUGUCAu -3' miRNA: 3'- -CCCGCAAGaGCauuUCGCuUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 66522 | 0.66 | 0.990257 |
Target: 5'- --aCGUUUUUGaAAAGCGAGUGCUAu -3' miRNA: 3'- cccGCAAGAGCaUUUCGCUUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 44153 | 0.66 | 0.990257 |
Target: 5'- cGGGCGUUUgCGgc-GGCGAcgGCa-- -3' miRNA: 3'- -CCCGCAAGaGCauuUCGCUuaCGguu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 44123 | 0.66 | 0.990257 |
Target: 5'- cGGGCGUUUgCGgc-GGCGAcgGCa-- -3' miRNA: 3'- -CCCGCAAGaGCauuUCGCUuaCGguu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 62804 | 0.67 | 0.985572 |
Target: 5'- cGGGUacagacGUUCUCGaAAAGCGAG-GUCGg -3' miRNA: 3'- -CCCG------CAAGAGCaUUUCGCUUaCGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 109613 | 0.67 | 0.985572 |
Target: 5'- cGGGUacagacGUUCUCGaAAAGCGAG-GUCGg -3' miRNA: 3'- -CCCG------CAAGAGCaUUUCGCUUaCGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 113787 | 0.67 | 0.983679 |
Target: 5'- aGGCGUUgUgCGUGaaccGAGCuGAUGCCGGg -3' miRNA: 3'- cCCGCAAgA-GCAU----UUCGcUUACGGUU- -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 19991 | 0.67 | 0.981603 |
Target: 5'- cGGGCacgUCUguaccCGaAAAGCGAGUGCUAu -3' miRNA: 3'- -CCCGca-AGA-----GCaUUUCGCUUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 61111 | 0.67 | 0.979335 |
Target: 5'- -cGCGUUCUCGUu--GCGAAcGuCCAGc -3' miRNA: 3'- ccCGCAAGAGCAuuuCGCUUaC-GGUU- -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 102808 | 0.68 | 0.974186 |
Target: 5'- uGGGCGgaaUUGUAcAGCGAcagcgugcacGUGCCGu -3' miRNA: 3'- -CCCGCaagAGCAUuUCGCU----------UACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 122623 | 0.68 | 0.971288 |
Target: 5'- -aGCGccgaccucgcuuUUCUCGaAAAGCGAGUGCUAu -3' miRNA: 3'- ccCGC------------AAGAGCaUUUCGCUUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 36323 | 0.69 | 0.953259 |
Target: 5'- aGGGCGUggUCGUAccGGGCGucAUGUCGc -3' miRNA: 3'- -CCCGCAagAGCAU--UUCGCu-UACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 62738 | 0.7 | 0.910961 |
Target: 5'- cGGGUacagacGUUCUCGaAAAGCGAGgucggcGCCGAc -3' miRNA: 3'- -CCCG------CAAGAGCaUUUCGCUUa-----CGGUU- -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 56425 | 0.71 | 0.889983 |
Target: 5'- uGGGCGaggaCUCGUuGAGCGAGuuaagguuuaauuUGCCAu -3' miRNA: 3'- -CCCGCaa--GAGCAuUUCGCUU-------------ACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 30156 | 0.73 | 0.798054 |
Target: 5'- -aGCGUUCUCGaAAAGCGAGcGCUAu -3' miRNA: 3'- ccCGCAAGAGCaUUUCGCUUaCGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 109521 | 0.74 | 0.758658 |
Target: 5'- -aGCGUUCUCGaAAAGCGAGgucggcGCCGAc -3' miRNA: 3'- ccCGCAAGAGCaUUUCGCUUa-----CGGUU- -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 66587 | 0.82 | 0.337225 |
Target: 5'- -aGCGUUCUCGaAAAGCGAGUGCUAu -3' miRNA: 3'- ccCGCAAGAGCaUUUCGCUUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 66456 | 0.82 | 0.337225 |
Target: 5'- -aGCGUUCUCGaAAAGCGAGUGCUAu -3' miRNA: 3'- ccCGCAAGAGCaUUUCGCUUACGGUu -5' |
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21200 | 3' | -50.2 | NC_004778.3 | + | 122523 | 0.9 | 0.11861 |
Target: 5'- cGGGUGUUCUCGaAAAGCGAGUGCUAu -3' miRNA: 3'- -CCCGCAAGAGCaUUUCGCUUACGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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