Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21201 | 5' | -58.7 | NC_004778.3 | + | 38087 | 0.68 | 0.634461 |
Target: 5'- gCGGCgCGacGCGCAacagCACGCUAGCGc-- -3' miRNA: 3'- -GCCG-GCa-CGCGUg---GUGCGAUCGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 79221 | 0.68 | 0.634461 |
Target: 5'- aCGGCgCGUggugaccgucGCGCGCCACuGCc-GCGAGAu -3' miRNA: 3'- -GCCG-GCA----------CGCGUGGUG-CGauCGCUUU- -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 39556 | 0.68 | 0.634461 |
Target: 5'- -aGCCGcuUGCGCccACCACGCUgcacAGCGGc- -3' miRNA: 3'- gcCGGC--ACGCG--UGGUGCGA----UCGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 34440 | 0.68 | 0.613922 |
Target: 5'- -cGUCG-GCGCACgGCGCgcGCGGAAa -3' miRNA: 3'- gcCGGCaCGCGUGgUGCGauCGCUUU- -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 21496 | 0.68 | 0.613922 |
Target: 5'- gGGCCGgaugGCGcCGCCAcCGCcGGcCGAAAc -3' miRNA: 3'- gCCGGCa---CGC-GUGGU-GCGaUC-GCUUU- -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 5135 | 0.68 | 0.603669 |
Target: 5'- -cGCCGUGCccacgccgGCGCCGCGCUucAGCa--- -3' miRNA: 3'- gcCGGCACG--------CGUGGUGCGA--UCGcuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 34189 | 0.68 | 0.593438 |
Target: 5'- gCGGUCGccgcgGCGCACCAUGCccgaguccgcGGCGAu- -3' miRNA: 3'- -GCCGGCa----CGCGUGGUGCGa---------UCGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 114322 | 0.68 | 0.592416 |
Target: 5'- uGGCCGcGUGCGCCugcuCGCUuuuguugAGCGGu- -3' miRNA: 3'- gCCGGCaCGCGUGGu---GCGA-------UCGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 38349 | 0.69 | 0.573068 |
Target: 5'- cCGGUCGU-CGCG-CGCGCUAGCGc-- -3' miRNA: 3'- -GCCGGCAcGCGUgGUGCGAUCGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 121433 | 0.69 | 0.562943 |
Target: 5'- uCGGCCGUGUcgccgccgucgGCGCCGCGCacaUAGUa--- -3' miRNA: 3'- -GCCGGCACG-----------CGUGGUGCG---AUCGcuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 64372 | 0.69 | 0.552866 |
Target: 5'- uCGGCCgGUGCGCACCuguaccaccccACGCUGuacuuGCGu-- -3' miRNA: 3'- -GCCGG-CACGCGUGG-----------UGCGAU-----CGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 88367 | 0.69 | 0.552866 |
Target: 5'- uGGUgGUGUuggGCACCGCGCUGgacgcGCGAc- -3' miRNA: 3'- gCCGgCACG---CGUGGUGCGAU-----CGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 58255 | 0.69 | 0.552866 |
Target: 5'- uGGUCGUGUGCgcagaaugcucGCCGCGCUucaAGCGc-- -3' miRNA: 3'- gCCGGCACGCG-----------UGGUGCGA---UCGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 110104 | 0.7 | 0.513164 |
Target: 5'- aCGG-CGUGCGCGCCgaGCGCUugGGCa--- -3' miRNA: 3'- -GCCgGCACGCGUGG--UGCGA--UCGcuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 120008 | 0.7 | 0.503416 |
Target: 5'- aCGGCCGUguccaacguGCGCGCCACGCcaaacuGCu--- -3' miRNA: 3'- -GCCGGCA---------CGCGUGGUGCGau----CGcuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 92735 | 0.7 | 0.49375 |
Target: 5'- cCGGCgGUGCGCGuCUugGCgAGCGc-- -3' miRNA: 3'- -GCCGgCACGCGU-GGugCGaUCGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 48618 | 0.7 | 0.49375 |
Target: 5'- -uGCCGUGCGUACCAUaGCgacGCGAc- -3' miRNA: 3'- gcCGGCACGCGUGGUG-CGau-CGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 72906 | 0.7 | 0.47468 |
Target: 5'- gCGG-CGUGuCGUgaGCCACGUUGGCGAu- -3' miRNA: 3'- -GCCgGCAC-GCG--UGGUGCGAUCGCUuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 67782 | 0.71 | 0.465285 |
Target: 5'- gCGGCUGgcccagcaUGCGCGCgGCGUUGGCGc-- -3' miRNA: 3'- -GCCGGC--------ACGCGUGgUGCGAUCGCuuu -5' |
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21201 | 5' | -58.7 | NC_004778.3 | + | 90282 | 0.71 | 0.419833 |
Target: 5'- uGGUCGUGCGCACCGCGgUcGUa--- -3' miRNA: 3'- gCCGGCACGCGUGGUGCgAuCGcuuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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