miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21202 5' -56.2 NC_004778.3 + 21833 0.66 0.851141
Target:  5'- uCCACGCGuaaaCGCCGCCgauuuucaagucgGCGUACAc- -3'
miRNA:   3'- cGGUGUGUga--GCGGCGG-------------CGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 90454 0.66 0.843841
Target:  5'- gGCCugGCuuGCUacggCGCCGCCGUGaucaACAAc -3'
miRNA:   3'- -CGGugUG--UGA----GCGGCGGCGCa---UGUUu -5'
21202 5' -56.2 NC_004778.3 + 60182 0.66 0.835541
Target:  5'- cGCCACcuuuuGCAacggcaCGCCGCUGuUGUACAGAu -3'
miRNA:   3'- -CGGUG-----UGUga----GCGGCGGC-GCAUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 57468 0.66 0.835541
Target:  5'- uGCCugGgcaaGCUgcCGCUGCCGCGcgACGGAa -3'
miRNA:   3'- -CGGugUg---UGA--GCGGCGGCGCa-UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 83816 0.66 0.835541
Target:  5'- aCCACAaACUCaaCGCCGCG-ACGAGg -3'
miRNA:   3'- cGGUGUgUGAGcgGCGGCGCaUGUUU- -5'
21202 5' -56.2 NC_004778.3 + 85121 0.67 0.827051
Target:  5'- cGCgGCGcCGCUCGUCGCUgGCGgGCAu- -3'
miRNA:   3'- -CGgUGU-GUGAGCGGCGG-CGCaUGUuu -5'
21202 5' -56.2 NC_004778.3 + 38934 0.67 0.824467
Target:  5'- cGCUGCGCgugcggaucggcguGgUCGCCGCCGCGcACc-- -3'
miRNA:   3'- -CGGUGUG--------------UgAGCGGCGGCGCaUGuuu -5'
21202 5' -56.2 NC_004778.3 + 4007 0.67 0.818377
Target:  5'- gGCCACGCA--CGUCGgCGCGUccucGCAAu -3'
miRNA:   3'- -CGGUGUGUgaGCGGCgGCGCA----UGUUu -5'
21202 5' -56.2 NC_004778.3 + 119938 0.67 0.818377
Target:  5'- -aCGCGCGCgguaCGCCuCCGCGUcgGCAAu -3'
miRNA:   3'- cgGUGUGUGa---GCGGcGGCGCA--UGUUu -5'
21202 5' -56.2 NC_004778.3 + 2540 0.67 0.818377
Target:  5'- uCCAgCAUGCggCGCCGCCaGCaGUACAAc -3'
miRNA:   3'- cGGU-GUGUGa-GCGGCGG-CG-CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 2362 0.67 0.818377
Target:  5'- -aCGCgaGCACUCGCCGg-GCGUGCAc- -3'
miRNA:   3'- cgGUG--UGUGAGCGGCggCGCAUGUuu -5'
21202 5' -56.2 NC_004778.3 + 95240 0.67 0.818377
Target:  5'- cGCCGCGgACUCGggcauggugCGCCGCG-GCGAc -3'
miRNA:   3'- -CGGUGUgUGAGCg--------GCGGCGCaUGUUu -5'
21202 5' -56.2 NC_004778.3 + 85298 0.67 0.81574
Target:  5'- cGCCGCaaACGCccgcguccaugccgUCGCCGCCGCaaACGc- -3'
miRNA:   3'- -CGGUG--UGUG--------------AGCGGCGGCGcaUGUuu -5'
21202 5' -56.2 NC_004778.3 + 85358 0.67 0.81574
Target:  5'- cGCCGCaaACGCccgcguccaugacaUCGCCGCCGCaaACGc- -3'
miRNA:   3'- -CGGUG--UGUG--------------AGCGGCGGCGcaUGUuu -5'
21202 5' -56.2 NC_004778.3 + 44229 0.67 0.809528
Target:  5'- aUCGCGCACgucuucgaCGCUGCCGUGUuuguCGAAa -3'
miRNA:   3'- cGGUGUGUGa-------GCGGCGGCGCAu---GUUU- -5'
21202 5' -56.2 NC_004778.3 + 89410 0.67 0.809528
Target:  5'- gGCC-CACgaauuugcaguGCUCGCuCGCCGaCGUGcCAAAa -3'
miRNA:   3'- -CGGuGUG-----------UGAGCG-GCGGC-GCAU-GUUU- -5'
21202 5' -56.2 NC_004778.3 + 81139 0.67 0.804138
Target:  5'- gGCCACcuguuuCACUCGCUGUaCGCGUucgugcccaacguuaGCGAAc -3'
miRNA:   3'- -CGGUGu-----GUGAGCGGCG-GCGCA---------------UGUUU- -5'
21202 5' -56.2 NC_004778.3 + 89863 0.67 0.800512
Target:  5'- uGCCGCGgAgaUGuuGCCGCuGUGCAGc -3'
miRNA:   3'- -CGGUGUgUgaGCggCGGCG-CAUGUUu -5'
21202 5' -56.2 NC_004778.3 + 21265 0.67 0.800512
Target:  5'- -aCAUACAUUUGCCGCUGCaucugGCGAu -3'
miRNA:   3'- cgGUGUGUGAGCGGCGGCGca---UGUUu -5'
21202 5' -56.2 NC_004778.3 + 125995 0.67 0.79134
Target:  5'- gGCCGCGCAUga--CGCUGCGUGgGAGu -3'
miRNA:   3'- -CGGUGUGUGagcgGCGGCGCAUgUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.