miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21204 5' -48.9 NC_004778.3 + 60491 0.66 0.998395
Target:  5'- gCUCaGCUGcc---GCGCCuCGUUGAUGc -3'
miRNA:   3'- aGAG-CGAUuuaaaCGCGG-GCAACUGC- -5'
21204 5' -48.9 NC_004778.3 + 29420 0.66 0.998203
Target:  5'- gCUCGUUAAA---GCGCUCGUuuugugcaauccugcUGGCGu -3'
miRNA:   3'- aGAGCGAUUUaaaCGCGGGCA---------------ACUGC- -5'
21204 5' -48.9 NC_004778.3 + 22813 0.66 0.998065
Target:  5'- gCUCGCUGcgcagcGUUUGCGacacgCCGUuaaUGGCGu -3'
miRNA:   3'- aGAGCGAUu-----UAAACGCg----GGCA---ACUGC- -5'
21204 5' -48.9 NC_004778.3 + 114337 0.66 0.996545
Target:  5'- gCUCGCUuuuGUUgagcgguuugacccUGCGCgCCGcgGGCGa -3'
miRNA:   3'- aGAGCGAuu-UAA--------------ACGCG-GGCaaCUGC- -5'
21204 5' -48.9 NC_004778.3 + 84378 0.67 0.994668
Target:  5'- cUCgcgCGCUGAugguaGCGCUCGUcGGCGc -3'
miRNA:   3'- -AGa--GCGAUUuaaa-CGCGGGCAaCUGC- -5'
21204 5' -48.9 NC_004778.3 + 91780 0.68 0.991693
Target:  5'- -aUCGCUucuUUaGCGCCCGUgcgcaucguguUGACa -3'
miRNA:   3'- agAGCGAuuuAAaCGCGGGCA-----------ACUGc -5'
21204 5' -48.9 NC_004778.3 + 55982 0.68 0.991575
Target:  5'- -gUCGCgcucggacagugGCGCCgCGUUGGCGu -3'
miRNA:   3'- agAGCGauuuaaa-----CGCGG-GCAACUGC- -5'
21204 5' -48.9 NC_004778.3 + 51283 0.68 0.989069
Target:  5'- cUUUGCUGGAcaUGCGCCCGagGuCGu -3'
miRNA:   3'- aGAGCGAUUUaaACGCGGGCaaCuGC- -5'
21204 5' -48.9 NC_004778.3 + 124087 0.68 0.98584
Target:  5'- --gCGCUGA---UGCGCgCgGUUGGCGg -3'
miRNA:   3'- agaGCGAUUuaaACGCG-GgCAACUGC- -5'
21204 5' -48.9 NC_004778.3 + 8405 0.69 0.979691
Target:  5'- cCUUGCUAAAUgaaUGCGgCCGcauagagcaaaUUGACGc -3'
miRNA:   3'- aGAGCGAUUUAa--ACGCgGGC-----------AACUGC- -5'
21204 5' -48.9 NC_004778.3 + 33558 0.69 0.97461
Target:  5'- --aCGCUGAucgUGUGUCCGUUGuCGc -3'
miRNA:   3'- agaGCGAUUuaaACGCGGGCAACuGC- -5'
21204 5' -48.9 NC_004778.3 + 51183 0.7 0.965342
Target:  5'- aUUUCGUUAAug--GCGCCCaaacguaucgaGUUGGCGg -3'
miRNA:   3'- -AGAGCGAUUuaaaCGCGGG-----------CAACUGC- -5'
21204 5' -48.9 NC_004778.3 + 60060 0.71 0.949609
Target:  5'- gCUCGUcAGA--UGCGUCCGUgGACGa -3'
miRNA:   3'- aGAGCGaUUUaaACGCGGGCAaCUGC- -5'
21204 5' -48.9 NC_004778.3 + 40433 0.72 0.924084
Target:  5'- --aCGCagUAAAUgaGcCGCCCGUUGACGa -3'
miRNA:   3'- agaGCG--AUUUAaaC-GCGGGCAACUGC- -5'
21204 5' -48.9 NC_004778.3 + 89815 0.74 0.861499
Target:  5'- gCUCGCUGGAacgGUGCCCGccgGACu -3'
miRNA:   3'- aGAGCGAUUUaaaCGCGGGCaa-CUGc -5'
21204 5' -48.9 NC_004778.3 + 98462 1.1 0.010301
Target:  5'- uUCUCGCUAAAUUUGCGCCCGUUGACGu -3'
miRNA:   3'- -AGAGCGAUUUAAACGCGGGCAACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.