miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21205 3' -65.5 NC_004778.3 + 8110 0.67 0.3821
Target:  5'- aCCcGCuuaucgCCGACACGGCGCaGCUGcaaGCCAu -3'
miRNA:   3'- -GGuCG------GGCUGUGCCGCGgCGGC---CGGU- -5'
21205 3' -65.5 NC_004778.3 + 127523 0.67 0.3821
Target:  5'- aCGGCgUCGACAaaGCGCCGgCGGUUAu -3'
miRNA:   3'- gGUCG-GGCUGUgcCGCGGCgGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 34433 0.67 0.38132
Target:  5'- aCCuGCCCGucggcGCACGGCGCgCGCgGaaagaacGCCu -3'
miRNA:   3'- -GGuCGGGC-----UGUGCCGCG-GCGgC-------CGGu -5'
21205 3' -65.5 NC_004778.3 + 32129 0.67 0.38132
Target:  5'- uUCAGCgCCuGCACGacggcgcuccaauGCGCCGC-GGCCAc -3'
miRNA:   3'- -GGUCG-GGcUGUGC-------------CGCGGCGgCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 127042 0.68 0.374346
Target:  5'- --cGUCgGGCGCGG-GCaCGUCGGCCAc -3'
miRNA:   3'- gguCGGgCUGUGCCgCG-GCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 80555 0.68 0.374346
Target:  5'- aCgAGUgCCGAUACGcgcGUGCCGCCaaGGCCGu -3'
miRNA:   3'- -GgUCG-GGCUGUGC---CGCGGCGG--CCGGU- -5'
21205 3' -65.5 NC_004778.3 + 121617 0.68 0.374346
Target:  5'- gCAGC---GCGCGGUccacGCCGUCGGCCGa -3'
miRNA:   3'- gGUCGggcUGUGCCG----CGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 29311 0.68 0.369746
Target:  5'- cUCGGCCaauaaucuucgaaggUGGCGCGGCGCgCGCUGgggugcGCCAa -3'
miRNA:   3'- -GGUCGG---------------GCUGUGCCGCG-GCGGC------CGGU- -5'
21205 3' -65.5 NC_004778.3 + 119890 0.68 0.359162
Target:  5'- uUCGG-CCGGCGCGGCGUCGUguuccaaaaCGGCg- -3'
miRNA:   3'- -GGUCgGGCUGUGCCGCGGCG---------GCCGgu -5'
21205 3' -65.5 NC_004778.3 + 89812 0.68 0.359162
Target:  5'- aCAGCUCGcuggaACGGUGcCCGCCGGaCUg -3'
miRNA:   3'- gGUCGGGCug---UGCCGC-GGCGGCC-GGu -5'
21205 3' -65.5 NC_004778.3 + 61915 0.68 0.359162
Target:  5'- aCGGCCggCGAauuaAUGGCGuuGgCGGCCGa -3'
miRNA:   3'- gGUCGG--GCUg---UGCCGCggCgGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 67785 0.68 0.351733
Target:  5'- gCUGGCCCaGCAugcgcgcggcguUGGCGCgCGCUGGCUg -3'
miRNA:   3'- -GGUCGGGcUGU------------GCCGCG-GCGGCCGGu -5'
21205 3' -65.5 NC_004778.3 + 46334 0.68 0.344414
Target:  5'- aCCAG-UCGAuCGCGGCGCgcaaGCUGGUCGa -3'
miRNA:   3'- -GGUCgGGCU-GUGCCGCGg---CGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 113886 0.68 0.343688
Target:  5'- -uGGCCgGGCgcgucgggcgaagGCGGCGCCGCgGGUUc -3'
miRNA:   3'- ggUCGGgCUG-------------UGCCGCGGCGgCCGGu -5'
21205 3' -65.5 NC_004778.3 + 34138 0.68 0.337205
Target:  5'- gCAGCgcgcguacgaCGACGCGGuCGCCGgCGGCg- -3'
miRNA:   3'- gGUCGg---------GCUGUGCC-GCGGCgGCCGgu -5'
21205 3' -65.5 NC_004778.3 + 92984 0.69 0.323118
Target:  5'- uUguGCaaCGACAaaGuCGCCGCCGGCCGc -3'
miRNA:   3'- -GguCGg-GCUGUgcC-GCGGCGGCCGGU- -5'
21205 3' -65.5 NC_004778.3 + 91809 0.69 0.323118
Target:  5'- --uGCCgGuCACGGCGCCGCCGauuuuuuuaccGCUg -3'
miRNA:   3'- gguCGGgCuGUGCCGCGGCGGC-----------CGGu -5'
21205 3' -65.5 NC_004778.3 + 86310 0.69 0.316241
Target:  5'- gCGGCgCGcCGCGGCGCCGUCGaaGCg- -3'
miRNA:   3'- gGUCGgGCuGUGCCGCGGCGGC--CGgu -5'
21205 3' -65.5 NC_004778.3 + 11388 0.69 0.314199
Target:  5'- gCAGCuuGGCACgcaaGGCGCaaaugcacgcuuugCGCCGcGCCAc -3'
miRNA:   3'- gGUCGggCUGUG----CCGCG--------------GCGGC-CGGU- -5'
21205 3' -65.5 NC_004778.3 + 124313 0.69 0.309475
Target:  5'- gCCGGCgUgGGCACGGCGUCuuCCGGCgAg -3'
miRNA:   3'- -GGUCG-GgCUGUGCCGCGGc-GGCCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.