miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 85455 0.67 0.814229
Target:  5'- cCGgcCGCGCGUUGG-GCGGCgCGC-CAa -3'
miRNA:   3'- -GCauGUGUGCAGCUgCGCCG-GCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 91596 0.67 0.822793
Target:  5'- gCGU--GCGCGUCGAuaagcaccaCGCGugucGCCGCGCGc -3'
miRNA:   3'- -GCAugUGUGCAGCU---------GCGC----CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 88346 0.67 0.830355
Target:  5'- gCGUGCugcacaaAUGCGUCGugGUGGuguugggcaCCGCGCu -3'
miRNA:   3'- -GCAUG-------UGUGCAGCugCGCC---------GGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 58386 0.67 0.831186
Target:  5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3'
miRNA:   3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 108444 0.67 0.831186
Target:  5'- aGUGCACACGgaucgCGAUGaccuCGGCUuaACAg -3'
miRNA:   3'- gCAUGUGUGCa----GCUGC----GCCGGcgUGU- -5'
21206 3' -56.9 NC_004778.3 + 119190 0.67 0.831186
Target:  5'- --cGCGCGCaaUCGGCGCG-CUGCGCAc -3'
miRNA:   3'- gcaUGUGUGc-AGCUGCGCcGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 122617 0.67 0.831186
Target:  5'- aGgggGCGCcCGUCGugGUGuuuCCGCGCGa -3'
miRNA:   3'- gCa--UGUGuGCAGCugCGCc--GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 43138 0.67 0.79662
Target:  5'- --gGCGC-CG-CGGCGC-GCCGCACGu -3'
miRNA:   3'- gcaUGUGuGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64770 0.67 0.793025
Target:  5'- cCGUGCACACGgcgccgauggccaaUaugcuuguucgggCGACGCGcGCUGCGCc -3'
miRNA:   3'- -GCAUGUGUGC--------------A-------------GCUGCGC-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 10267 0.67 0.805502
Target:  5'- -uUGCGCGCGg-GAC-CGGCgGCGCAu -3'
miRNA:   3'- gcAUGUGUGCagCUGcGCCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 3048 0.67 0.805502
Target:  5'- -aUAUugAUGUCaACGCGGCaagGCACAc -3'
miRNA:   3'- gcAUGugUGCAGcUGCGCCGg--CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 102865 0.68 0.787591
Target:  5'- gGUGCGaACGaCGACaacuauGCGGCCGUGCGc -3'
miRNA:   3'- gCAUGUgUGCaGCUG------CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 14529 0.68 0.769126
Target:  5'- gCGUGCGuCACGUCGuGC-CGGacgaCCGCGCGu -3'
miRNA:   3'- -GCAUGU-GUGCAGC-UGcGCC----GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 30912 0.68 0.759708
Target:  5'- aGUGCcgguGCugGUU--UGCGGCCGCAUg -3'
miRNA:   3'- gCAUG----UGugCAGcuGCGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 37836 0.68 0.750179
Target:  5'- gCGgcgACACGCGuggugcuuaUCGACGCG-CaCGCGCAg -3'
miRNA:   3'- -GCa--UGUGUGC---------AGCUGCGCcG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 25968 0.68 0.74922
Target:  5'- uGUACGCcuuaacgGCGUUGA-GCGuGCUGCACGu -3'
miRNA:   3'- gCAUGUG-------UGCAGCUgCGC-CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64816 0.68 0.769126
Target:  5'- --cACGCACGUCaucaaGGCGCGGUCGaaaACu -3'
miRNA:   3'- gcaUGUGUGCAG-----CUGCGCCGGCg--UGu -5'
21206 3' -56.9 NC_004778.3 + 90867 0.68 0.777499
Target:  5'- aGUGgACGCGUUG-CGCGGCauacuguCGUACGc -3'
miRNA:   3'- gCAUgUGUGCAGCuGCGCCG-------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 94202 0.68 0.787591
Target:  5'- gGUGCACAgGcaCGA-GUGGCCGCAgGg -3'
miRNA:   3'- gCAUGUGUgCa-GCUgCGCCGGCGUgU- -5'
21206 3' -56.9 NC_004778.3 + 97279 0.68 0.759708
Target:  5'- aGUACAUAUGUUugGAaGUGGCCGCGg- -3'
miRNA:   3'- gCAUGUGUGCAG--CUgCGCCGGCGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.