miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 24065 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 23868 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 95778 0.66 0.855262
Target:  5'- ---cCGCGCGgcagCG-CGcCGGCCGCGCu -3'
miRNA:   3'- gcauGUGUGCa---GCuGC-GCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 117687 0.66 0.8394
Target:  5'- uGUGCGC-CGUgGAC-CGGCCGUc-- -3'
miRNA:   3'- gCAUGUGuGCAgCUGcGCCGGCGugu -5'
21206 3' -56.9 NC_004778.3 + 38304 0.66 0.870327
Target:  5'- --cGCGCACG-CGAcCGCGcGCCGaGCAc -3'
miRNA:   3'- gcaUGUGUGCaGCU-GCGC-CGGCgUGU- -5'
21206 3' -56.9 NC_004778.3 + 112410 0.66 0.876834
Target:  5'- aGgcgGCACGuaguaaucaucuuCGcUCGACGCGGgCCGCAg- -3'
miRNA:   3'- gCa--UGUGU-------------GC-AGCUGCGCC-GGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 68076 0.66 0.847428
Target:  5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3'
miRNA:   3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 71313 0.66 0.854488
Target:  5'- -uUGCAgGCGUCGGCGCguuuaacucguggGGCUcgagGCGCGg -3'
miRNA:   3'- gcAUGUgUGCAGCUGCG-------------CCGG----CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 115335 0.66 0.862898
Target:  5'- aCG-ACGCugGUCu-CGCGGuuGCAa- -3'
miRNA:   3'- -GCaUGUGugCAGcuGCGCCggCGUgu -5'
21206 3' -56.9 NC_004778.3 + 7646 0.66 0.855262
Target:  5'- -uUACGCGCGgcaaUGAUGU-GCCGCGCAu -3'
miRNA:   3'- gcAUGUGUGCa---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 117465 0.66 0.862898
Target:  5'- -cUGC-CACGUUGACGaUGGUCGCGg- -3'
miRNA:   3'- gcAUGuGUGCAGCUGC-GCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 19482 0.66 0.862898
Target:  5'- aCGUAauggGCGCGcCGACGUgcaaauGGuuGCGCAc -3'
miRNA:   3'- -GCAUg---UGUGCaGCUGCG------CCggCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56116 0.66 0.870327
Target:  5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3'
miRNA:   3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56620 0.66 0.870327
Target:  5'- ----aACACcaCGACGCGGCUGCcCAa -3'
miRNA:   3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 82465 0.66 0.870327
Target:  5'- ----aGCGCGUCGGCGUGagcGCCgGCGCu -3'
miRNA:   3'- gcaugUGUGCAGCUGCGC---CGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 34170 0.66 0.8394
Target:  5'- --aGCACGCGUuagCGACgguGCGGUCGcCGCGg -3'
miRNA:   3'- gcaUGUGUGCA---GCUG---CGCCGGC-GUGU- -5'
21206 3' -56.9 NC_004778.3 + 40815 0.66 0.877546
Target:  5'- aCGUcaaagACGCGCa--GACGCuGCUGCACAu -3'
miRNA:   3'- -GCA-----UGUGUGcagCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 105198 0.66 0.877546
Target:  5'- uGUGgACaaACG-CGGCGCcGUCGCACAa -3'
miRNA:   3'- gCAUgUG--UGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 82378 0.66 0.877546
Target:  5'- uGUAguCAUGUCGAUgggaGUGGCCgGCAUu -3'
miRNA:   3'- gCAUguGUGCAGCUG----CGCCGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 90314 0.66 0.869594
Target:  5'- uGUACauguuACGCGUCGgguuguaauuaagGCGCGGCaugaacaagaGCACGu -3'
miRNA:   3'- gCAUG-----UGUGCAGC-------------UGCGCCGg---------CGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.