Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 95778 | 0.66 | 0.855262 |
Target: 5'- ---cCGCGCGgcagCG-CGcCGGCCGCGCu -3' miRNA: 3'- gcauGUGUGCa---GCuGC-GCCGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64154 | 0.66 | 0.855262 |
Target: 5'- ----aGCGCGUCGcgccCGUGGCCGC-CGa -3' miRNA: 3'- gcaugUGUGCAGCu---GCGCCGGCGuGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 73505 | 0.66 | 0.854488 |
Target: 5'- gCGUGCACGC-UCGuguacacGCGCaauucGGCgGCGCAg -3' miRNA: 3'- -GCAUGUGUGcAGC-------UGCG-----CCGgCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 95309 | 0.66 | 0.8394 |
Target: 5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3' miRNA: 3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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