miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 53924 0.67 0.803738
Target:  5'- uGUGCACAacuuuaaaugCGcCGCGuGCCGCACu -3'
miRNA:   3'- gCAUGUGUgca-------GCuGCGC-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 55120 0.73 0.453955
Target:  5'- --gGCGCACGUCGuaagguaucaGCGCGaGCCGCAg- -3'
miRNA:   3'- gcaUGUGUGCAGC----------UGCGC-CGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 55679 0.69 0.688156
Target:  5'- uGUugGCGCGacuaauguuguuugUCGA-GCGGCUGUACAc -3'
miRNA:   3'- gCAugUGUGC--------------AGCUgCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55951 0.76 0.314853
Target:  5'- gCGUGCACGCGgaaCGACGUaGCuCGCGCAu -3'
miRNA:   3'- -GCAUGUGUGCa--GCUGCGcCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56116 0.66 0.870327
Target:  5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3'
miRNA:   3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56620 0.66 0.870327
Target:  5'- ----aACACcaCGACGCGGCUGCcCAa -3'
miRNA:   3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 56931 0.69 0.708149
Target:  5'- gCGUcCGCGuCGUCGACGCucaacgccaccgacGGCgGCACu -3'
miRNA:   3'- -GCAuGUGU-GCAGCUGCG--------------CCGgCGUGu -5'
21206 3' -56.9 NC_004778.3 + 58386 0.67 0.831186
Target:  5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3'
miRNA:   3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 60474 0.7 0.660886
Target:  5'- aCGUugAgGuCGUCGACGCucagcuGCCGCGCc -3'
miRNA:   3'- -GCAugUgU-GCAGCUGCGc-----CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 61362 0.66 0.870327
Target:  5'- uGUGCGgACGgcgcCGGCGCGucGUCGCugAg -3'
miRNA:   3'- gCAUGUgUGCa---GCUGCGC--CGGCGugU- -5'
21206 3' -56.9 NC_004778.3 + 64150 0.72 0.563638
Target:  5'- uGUGCAaACGUUGGCGCGGUgggcguccaucacguCGUACAa -3'
miRNA:   3'- gCAUGUgUGCAGCUGCGCCG---------------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64154 0.66 0.855262
Target:  5'- ----aGCGCGUCGcgccCGUGGCCGC-CGa -3'
miRNA:   3'- gcaugUGUGCAGCu---GCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 64660 0.66 0.877546
Target:  5'- cCGUGCGCuuuCaaCGGCGCGGgCCaCACAu -3'
miRNA:   3'- -GCAUGUGu--GcaGCUGCGCC-GGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64770 0.67 0.793025
Target:  5'- cCGUGCACACGgcgccgauggccaaUaugcuuguucgggCGACGCGcGCUGCGCc -3'
miRNA:   3'- -GCAUGUGUGC--------------A-------------GCUGCGC-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 64816 0.68 0.769126
Target:  5'- --cACGCACGUCaucaaGGCGCGGUCGaaaACu -3'
miRNA:   3'- gcaUGUGUGCAG-----CUGCGCCGGCg--UGu -5'
21206 3' -56.9 NC_004778.3 + 65922 0.71 0.579705
Target:  5'- aGUAagaaGCGCGUUGugGCGccGCCGCAgCAu -3'
miRNA:   3'- gCAUg---UGUGCAGCugCGC--CGGCGU-GU- -5'
21206 3' -56.9 NC_004778.3 + 67799 0.7 0.630397
Target:  5'- --cGCGCgGCGUUGGCGCgcgcuGGCUGCGCGg -3'
miRNA:   3'- gcaUGUG-UGCAGCUGCG-----CCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68076 0.66 0.847428
Target:  5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3'
miRNA:   3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68141 0.73 0.463141
Target:  5'- cCGUACucucGCACGUCGGCGaCGGCgcaucguaGCGCGu -3'
miRNA:   3'- -GCAUG----UGUGCAGCUGC-GCCGg-------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 70322 0.67 0.79662
Target:  5'- aCGgacgACAUGCaGUUGcACGCGGCC-CACAu -3'
miRNA:   3'- -GCa---UGUGUG-CAGC-UGCGCCGGcGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.