miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 100311 0.67 0.814229
Target:  5'- --cACGCcUGUCcaacCGCGGCCGUACAu -3'
miRNA:   3'- gcaUGUGuGCAGcu--GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 98510 0.75 0.376088
Target:  5'- cCGUACuugACGCcaUCGAUGCGGCCGCAa- -3'
miRNA:   3'- -GCAUG---UGUGc-AGCUGCGCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 97279 0.68 0.759708
Target:  5'- aGUACAUAUGUUugGAaGUGGCCGCGg- -3'
miRNA:   3'- gCAUGUGUGCAG--CUgCGCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 96470 1.09 0.002205
Target:  5'- aCGUACACACGUCGACGCGGCCGCACAg -3'
miRNA:   3'- -GCAUGUGUGCAGCUGCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 95778 0.66 0.855262
Target:  5'- ---cCGCGCGgcagCG-CGcCGGCCGCGCu -3'
miRNA:   3'- gcauGUGUGCa---GCuGC-GCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 95309 0.66 0.8394
Target:  5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3'
miRNA:   3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 94500 0.74 0.409581
Target:  5'- aCGUugGCACaauaaCGACGCcGCCGCGCAc -3'
miRNA:   3'- -GCAugUGUGca---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 94202 0.68 0.787591
Target:  5'- gGUGCACAgGcaCGA-GUGGCCGCAgGg -3'
miRNA:   3'- gCAUGUGUgCa-GCUgCGCCGGCGUgU- -5'
21206 3' -56.9 NC_004778.3 + 91596 0.67 0.822793
Target:  5'- gCGU--GCGCGUCGAuaagcaccaCGCGugucGCCGCGCGc -3'
miRNA:   3'- -GCAugUGUGCAGCU---------GCGC----CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 90867 0.68 0.777499
Target:  5'- aGUGgACGCGUUG-CGCGGCauacuguCGUACGc -3'
miRNA:   3'- gCAUgUGUGCAGCuGCGCCG-------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 90643 0.67 0.805502
Target:  5'- aCGUuuGCGCACGcCGucaacgucaGCGCGGUCGaCGCu -3'
miRNA:   3'- -GCA--UGUGUGCaGC---------UGCGCCGGC-GUGu -5'
21206 3' -56.9 NC_004778.3 + 90314 0.66 0.869594
Target:  5'- uGUACauguuACGCGUCGgguuguaauuaagGCGCGGCaugaacaagaGCACGu -3'
miRNA:   3'- gCAUG-----UGUGCAGC-------------UGCGCCGg---------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 88346 0.67 0.830355
Target:  5'- gCGUGCugcacaaAUGCGUCGugGUGGuguugggcaCCGCGCu -3'
miRNA:   3'- -GCAUG-------UGUGCAGCugCGCC---------GGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 86808 0.7 0.630397
Target:  5'- uCGUGCAC-CGUCGGCGgCGGaaCGCAa- -3'
miRNA:   3'- -GCAUGUGuGCAGCUGC-GCCg-GCGUgu -5'
21206 3' -56.9 NC_004778.3 + 85599 0.73 0.453955
Target:  5'- -uUGC-CGCGUCGGa-CGGCCGCGCAa -3'
miRNA:   3'- gcAUGuGUGCAGCUgcGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 85455 0.67 0.814229
Target:  5'- cCGgcCGCGCGUUGG-GCGGCgCGC-CAa -3'
miRNA:   3'- -GCauGUGUGCAGCUgCGCCG-GCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 83270 0.71 0.610065
Target:  5'- --gACGCGCGgaaCGGCGCGGCggcucCGCGCu -3'
miRNA:   3'- gcaUGUGUGCa--GCUGCGCCG-----GCGUGu -5'
21206 3' -56.9 NC_004778.3 + 82465 0.66 0.870327
Target:  5'- ----aGCGCGUCGGCGUGagcGCCgGCGCu -3'
miRNA:   3'- gcaugUGUGCAGCUGCGC---CGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 82378 0.66 0.877546
Target:  5'- uGUAguCAUGUCGAUgggaGUGGCCgGCAUu -3'
miRNA:   3'- gCAUguGUGCAGCUG----CGCCGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 82057 0.72 0.529927
Target:  5'- gCGUGCgACACGUCG-CGCccaaaauaacGCCGCACGc -3'
miRNA:   3'- -GCAUG-UGUGCAGCuGCGc---------CGGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.