Results 41 - 60 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 81465 | 0.69 | 0.678086 |
Target: 5'- gCGUGCGCGCGUacUGGCGCGugcuuucgaacaaaGCgGCGCu -3' miRNA: 3'- -GCAUGUGUGCA--GCUGCGC--------------CGgCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 80717 | 0.68 | 0.740548 |
Target: 5'- gCGUGCGaaccCGUCGcCGCGGCuacuacaacaCGCACGa -3' miRNA: 3'- -GCAUGUgu--GCAGCuGCGCCG----------GCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 73505 | 0.66 | 0.854488 |
Target: 5'- gCGUGCACGC-UCGuguacacGCGCaauucGGCgGCGCAg -3' miRNA: 3'- -GCAUGUGUGcAGC-------UGCG-----CCGgCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 71313 | 0.66 | 0.854488 |
Target: 5'- -uUGCAgGCGUCGGCGCguuuaacucguggGGCUcgagGCGCGg -3' miRNA: 3'- gcAUGUgUGCAGCUGCG-------------CCGG----CGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 70322 | 0.67 | 0.79662 |
Target: 5'- aCGgacgACAUGCaGUUGcACGCGGCC-CACAu -3' miRNA: 3'- -GCa---UGUGUG-CAGC-UGCGCCGGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 68141 | 0.73 | 0.463141 |
Target: 5'- cCGUACucucGCACGUCGGCGaCGGCgcaucguaGCGCGu -3' miRNA: 3'- -GCAUG----UGUGCAGCUGC-GCCGg-------CGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 68076 | 0.66 | 0.847428 |
Target: 5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3' miRNA: 3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 67799 | 0.7 | 0.630397 |
Target: 5'- --cGCGCgGCGUUGGCGCgcgcuGGCUGCGCGg -3' miRNA: 3'- gcaUGUG-UGCAGCUGCG-----CCGGCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 65922 | 0.71 | 0.579705 |
Target: 5'- aGUAagaaGCGCGUUGugGCGccGCCGCAgCAu -3' miRNA: 3'- gCAUg---UGUGCAGCugCGC--CGGCGU-GU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64816 | 0.68 | 0.769126 |
Target: 5'- --cACGCACGUCaucaaGGCGCGGUCGaaaACu -3' miRNA: 3'- gcaUGUGUGCAG-----CUGCGCCGGCg--UGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64770 | 0.67 | 0.793025 |
Target: 5'- cCGUGCACACGgcgccgauggccaaUaugcuuguucgggCGACGCGcGCUGCGCc -3' miRNA: 3'- -GCAUGUGUGC--------------A-------------GCUGCGC-CGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64660 | 0.66 | 0.877546 |
Target: 5'- cCGUGCGCuuuCaaCGGCGCGGgCCaCACAu -3' miRNA: 3'- -GCAUGUGu--GcaGCUGCGCC-GGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64154 | 0.66 | 0.855262 |
Target: 5'- ----aGCGCGUCGcgccCGUGGCCGC-CGa -3' miRNA: 3'- gcaugUGUGCAGCu---GCGCCGGCGuGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 64150 | 0.72 | 0.563638 |
Target: 5'- uGUGCAaACGUUGGCGCGGUgggcguccaucacguCGUACAa -3' miRNA: 3'- gCAUGUgUGCAGCUGCGCCG---------------GCGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 61362 | 0.66 | 0.870327 |
Target: 5'- uGUGCGgACGgcgcCGGCGCGucGUCGCugAg -3' miRNA: 3'- gCAUGUgUGCa---GCUGCGC--CGGCGugU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 60474 | 0.7 | 0.660886 |
Target: 5'- aCGUugAgGuCGUCGACGCucagcuGCCGCGCc -3' miRNA: 3'- -GCAugUgU-GCAGCUGCGc-----CGGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 58386 | 0.67 | 0.831186 |
Target: 5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3' miRNA: 3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 56931 | 0.69 | 0.708149 |
Target: 5'- gCGUcCGCGuCGUCGACGCucaacgccaccgacGGCgGCACu -3' miRNA: 3'- -GCAuGUGU-GCAGCUGCG--------------CCGgCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 56620 | 0.66 | 0.870327 |
Target: 5'- ----aACACcaCGACGCGGCUGCcCAa -3' miRNA: 3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 56116 | 0.66 | 0.870327 |
Target: 5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3' miRNA: 3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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