miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 14529 0.68 0.769126
Target:  5'- gCGUGCGuCACGUCGuGC-CGGacgaCCGCGCGu -3'
miRNA:   3'- -GCAUGU-GUGCAGC-UGcGCC----GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 30912 0.68 0.759708
Target:  5'- aGUGCcgguGCugGUU--UGCGGCCGCAUg -3'
miRNA:   3'- gCAUG----UGugCAGcuGCGCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 37836 0.68 0.750179
Target:  5'- gCGgcgACACGCGuggugcuuaUCGACGCG-CaCGCGCAg -3'
miRNA:   3'- -GCa--UGUGUGC---------AGCUGCGCcG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 25968 0.68 0.74922
Target:  5'- uGUACGCcuuaacgGCGUUGA-GCGuGCUGCACGu -3'
miRNA:   3'- gCAUGUG-------UGCAGCUgCGC-CGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 120958 0.69 0.721013
Target:  5'- --gACugGCGg-GGCGCgGGCCGCGCc -3'
miRNA:   3'- gcaUGugUGCagCUGCG-CCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 9405 0.69 0.718055
Target:  5'- --cACGCGCGcaaacugcagcaguUUGGCGUGGCgCGCACGu -3'
miRNA:   3'- gcaUGUGUGC--------------AGCUGCGCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 107597 0.69 0.701177
Target:  5'- aCGUACGCACGgucagugacaUUGACGCG--CGCGCAa -3'
miRNA:   3'- -GCAUGUGUGC----------AGCUGCGCcgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 16302 0.69 0.691169
Target:  5'- aCGUgccgGCAgGCGUCGGCGUGauaaCUGCGCAg -3'
miRNA:   3'- -GCA----UGUgUGCAGCUGCGCc---GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55679 0.69 0.688156
Target:  5'- uGUugGCGCGacuaauguuguuugUCGA-GCGGCUGUACAc -3'
miRNA:   3'- gCAugUGUGC--------------AGCUgCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 115335 0.66 0.862898
Target:  5'- aCG-ACGCugGUCu-CGCGGuuGCAa- -3'
miRNA:   3'- -GCaUGUGugCAGcuGCGCCggCGUgu -5'
21206 3' -56.9 NC_004778.3 + 7646 0.66 0.855262
Target:  5'- -uUACGCGCGgcaaUGAUGU-GCCGCGCAu -3'
miRNA:   3'- gcAUGUGUGCa---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 71313 0.66 0.854488
Target:  5'- -uUGCAgGCGUCGGCGCguuuaacucguggGGCUcgagGCGCGg -3'
miRNA:   3'- gcAUGUgUGCAGCUGCG-------------CCGG----CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68076 0.66 0.847428
Target:  5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3'
miRNA:   3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 117465 0.66 0.862898
Target:  5'- -cUGC-CACGUUGACGaUGGUCGCGg- -3'
miRNA:   3'- gcAUGuGUGCAGCUGC-GCCGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 19482 0.66 0.862898
Target:  5'- aCGUAauggGCGCGcCGACGUgcaaauGGuuGCGCAc -3'
miRNA:   3'- -GCAUg---UGUGCaGCUGCG------CCggCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56116 0.66 0.870327
Target:  5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3'
miRNA:   3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 56620 0.66 0.870327
Target:  5'- ----aACACcaCGACGCGGCUGCcCAa -3'
miRNA:   3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 82465 0.66 0.870327
Target:  5'- ----aGCGCGUCGGCGUGagcGCCgGCGCu -3'
miRNA:   3'- gcaugUGUGCAGCUGCGC---CGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 39209 0.66 0.877546
Target:  5'- uGUGCACguGCGUCaGCGCGGa-GCAgGg -3'
miRNA:   3'- gCAUGUG--UGCAGcUGCGCCggCGUgU- -5'
21206 3' -56.9 NC_004778.3 + 96470 1.09 0.002205
Target:  5'- aCGUACACACGUCGACGCGGCCGCACAg -3'
miRNA:   3'- -GCAUGUGUGCAGCUGCGCCGGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.