Results 61 - 80 of 104 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 97279 | 0.68 | 0.759708 |
Target: 5'- aGUACAUAUGUUugGAaGUGGCCGCGg- -3' miRNA: 3'- gCAUGUGUGCAG--CUgCGCCGGCGUgu -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 33653 | 0.68 | 0.750179 |
Target: 5'- aCGgagGCGCAgCGcggcCGGCGCGcuGCCGCGCGg -3' miRNA: 3'- -GCa--UGUGU-GCa---GCUGCGC--CGGCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 8000 | 0.68 | 0.750179 |
Target: 5'- uGUGCGCgGCGcCGACGgcggcgacaCGGCCGaCGCGu -3' miRNA: 3'- gCAUGUG-UGCaGCUGC---------GCCGGC-GUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 80717 | 0.68 | 0.740548 |
Target: 5'- gCGUGCGaaccCGUCGcCGCGGCuacuacaacaCGCACGa -3' miRNA: 3'- -GCAUGUgu--GCAGCuGCGCCG----------GCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 58386 | 0.67 | 0.831186 |
Target: 5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3' miRNA: 3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 108444 | 0.67 | 0.831186 |
Target: 5'- aGUGCACACGgaucgCGAUGaccuCGGCUuaACAg -3' miRNA: 3'- gCAUGUGUGCa----GCUGC----GCCGGcgUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 39209 | 0.66 | 0.877546 |
Target: 5'- uGUGCACguGCGUCaGCGCGGa-GCAgGg -3' miRNA: 3'- gCAUGUG--UGCAGcUGCGCCggCGUgU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 82465 | 0.66 | 0.870327 |
Target: 5'- ----aGCGCGUCGGCGUGagcGCCgGCGCu -3' miRNA: 3'- gcaugUGUGCAGCUGCGC---CGG-CGUGu -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 56620 | 0.66 | 0.870327 |
Target: 5'- ----aACACcaCGACGCGGCUGCcCAa -3' miRNA: 3'- gcaugUGUGcaGCUGCGCCGGCGuGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 56116 | 0.66 | 0.870327 |
Target: 5'- uGUAUucuuuUACGUCGAaauugGCGGUCGUGCGc -3' miRNA: 3'- gCAUGu----GUGCAGCUg----CGCCGGCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 19482 | 0.66 | 0.862898 |
Target: 5'- aCGUAauggGCGCGcCGACGUgcaaauGGuuGCGCAc -3' miRNA: 3'- -GCAUg---UGUGCaGCUGCG------CCggCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 117465 | 0.66 | 0.862898 |
Target: 5'- -cUGC-CACGUUGACGaUGGUCGCGg- -3' miRNA: 3'- gcAUGuGUGCAGCUGC-GCCGGCGUgu -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 115335 | 0.66 | 0.862898 |
Target: 5'- aCG-ACGCugGUCu-CGCGGuuGCAa- -3' miRNA: 3'- -GCaUGUGugCAGcuGCGCCggCGUgu -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 7646 | 0.66 | 0.855262 |
Target: 5'- -uUACGCGCGgcaaUGAUGU-GCCGCGCAu -3' miRNA: 3'- gcAUGUGUGCa---GCUGCGcCGGCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 71313 | 0.66 | 0.854488 |
Target: 5'- -uUGCAgGCGUCGGCGCguuuaacucguggGGCUcgagGCGCGg -3' miRNA: 3'- gcAUGUgUGCAGCUGCG-------------CCGG----CGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 68076 | 0.66 | 0.847428 |
Target: 5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3' miRNA: 3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 21746 | 0.66 | 0.847428 |
Target: 5'- --gAC-CGCG-CGugGCGGCCuccacGCGCAa -3' miRNA: 3'- gcaUGuGUGCaGCugCGCCGG-----CGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 34170 | 0.66 | 0.8394 |
Target: 5'- --aGCACGCGUuagCGACgguGCGGUCGcCGCGg -3' miRNA: 3'- gcaUGUGUGCA---GCUG---CGCCGGC-GUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 122617 | 0.67 | 0.831186 |
Target: 5'- aGgggGCGCcCGUCGugGUGuuuCCGCGCGa -3' miRNA: 3'- gCa--UGUGuGCAGCugCGCc--GGCGUGU- -5' |
|||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 119190 | 0.67 | 0.831186 |
Target: 5'- --cGCGCGCaaUCGGCGCG-CUGCGCAc -3' miRNA: 3'- gcaUGUGUGc-AGCUGCGCcGGCGUGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home