Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21206 | 3' | -56.9 | NC_004778.3 | + | 88346 | 0.67 | 0.830355 |
Target: 5'- gCGUGCugcacaaAUGCGUCGugGUGGuguugggcaCCGCGCu -3' miRNA: 3'- -GCAUG-------UGUGCAGCugCGCC---------GGCGUGu -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 58386 | 0.67 | 0.831186 |
Target: 5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3' miRNA: 3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 108444 | 0.67 | 0.831186 |
Target: 5'- aGUGCACACGgaucgCGAUGaccuCGGCUuaACAg -3' miRNA: 3'- gCAUGUGUGCa----GCUGC----GCCGGcgUGU- -5' |
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21206 | 3' | -56.9 | NC_004778.3 | + | 40815 | 0.66 | 0.877546 |
Target: 5'- aCGUcaaagACGCGCa--GACGCuGCUGCACAu -3' miRNA: 3'- -GCA-----UGUGUGcagCUGCGcCGGCGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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