miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 119190 0.67 0.831186
Target:  5'- --cGCGCGCaaUCGGCGCG-CUGCGCAc -3'
miRNA:   3'- gcaUGUGUGc-AGCUGCGCcGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64150 0.72 0.563638
Target:  5'- uGUGCAaACGUUGGCGCGGUgggcguccaucacguCGUACAa -3'
miRNA:   3'- gCAUGUgUGCAGCUGCGCCG---------------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 122617 0.67 0.831186
Target:  5'- aGgggGCGCcCGUCGugGUGuuuCCGCGCGa -3'
miRNA:   3'- gCa--UGUGuGCAGCugCGCc--GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 58386 0.67 0.831186
Target:  5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3'
miRNA:   3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 85455 0.67 0.814229
Target:  5'- cCGgcCGCGCGUUGG-GCGGCgCGC-CAa -3'
miRNA:   3'- -GCauGUGUGCAGCUgCGCCG-GCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 44231 0.67 0.79662
Target:  5'- --cGCGCACGucuUCGACGCuGCCGUg-- -3'
miRNA:   3'- gcaUGUGUGC---AGCUGCGcCGGCGugu -5'
21206 3' -56.9 NC_004778.3 + 7814 0.75 0.384286
Target:  5'- aCGUGCGCuCGgccgaCGGCGUGGaCCGCGCGc -3'
miRNA:   3'- -GCAUGUGuGCa----GCUGCGCC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55120 0.73 0.453955
Target:  5'- --gGCGCACGUCGuaagguaucaGCGCGaGCCGCAg- -3'
miRNA:   3'- gcaUGUGUGCAGC----------UGCGC-CGGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 55951 0.76 0.314853
Target:  5'- gCGUGCACGCGgaaCGACGUaGCuCGCGCAu -3'
miRNA:   3'- -GCAUGUGUGCa--GCUGCGcCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 100840 0.71 0.610065
Target:  5'- ---cCGCACGUCGACGCca-CGCGCAa -3'
miRNA:   3'- gcauGUGUGCAGCUGCGccgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 52043 0.7 0.650735
Target:  5'- --aACACAaucacaagCGACGCGGCCgGCGCGu -3'
miRNA:   3'- gcaUGUGUgca-----GCUGCGCCGG-CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34428 0.69 0.691169
Target:  5'- --gGCGCAccugccCGUCGGCGCacGGCgCGCGCGg -3'
miRNA:   3'- gcaUGUGU------GCAGCUGCG--CCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 80717 0.68 0.740548
Target:  5'- gCGUGCGaaccCGUCGcCGCGGCuacuacaacaCGCACGa -3'
miRNA:   3'- -GCAUGUgu--GCAGCuGCGCCG----------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 90867 0.68 0.777499
Target:  5'- aGUGgACGCGUUG-CGCGGCauacuguCGUACGc -3'
miRNA:   3'- gCAUgUGUGCAGCuGCGCCG-------GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 122077 0.75 0.368009
Target:  5'- gGUACGCG-GUCGAC-CGGCaCGCGCAu -3'
miRNA:   3'- gCAUGUGUgCAGCUGcGCCG-GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 100311 0.67 0.814229
Target:  5'- --cACGCcUGUCcaacCGCGGCCGUACAu -3'
miRNA:   3'- gcaUGUGuGCAGcu--GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 95309 0.66 0.8394
Target:  5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3'
miRNA:   3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 49307 0.66 0.847428
Target:  5'- gCGcgGCGCG-GUCauugGACGCGGCgcCGCACAa -3'
miRNA:   3'- -GCa-UGUGUgCAG----CUGCGCCG--GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 55679 0.69 0.688156
Target:  5'- uGUugGCGCGacuaauguuguuugUCGA-GCGGCUGUACAc -3'
miRNA:   3'- gCAugUGUGC--------------AGCUgCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 16302 0.69 0.691169
Target:  5'- aCGUgccgGCAgGCGUCGGCGUGauaaCUGCGCAg -3'
miRNA:   3'- -GCA----UGUgUGCAGCUGCGCc---GGCGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.