miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 4671 0.76 0.352211
Target:  5'- gGUGC---CGUCGAuaaCGCGGCCGCACGg -3'
miRNA:   3'- gCAUGuguGCAGCU---GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68141 0.73 0.463141
Target:  5'- cCGUACucucGCACGUCGGCGaCGGCgcaucguaGCGCGu -3'
miRNA:   3'- -GCAUG----UGUGCAGCUGC-GCCGg-------CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 1624 0.66 0.870327
Target:  5'- --aACACACGUUG-CGCuuGCUGCGCu -3'
miRNA:   3'- gcaUGUGUGCAGCuGCGc-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 100311 0.67 0.814229
Target:  5'- --cACGCcUGUCcaacCGCGGCCGUACAu -3'
miRNA:   3'- gcaUGUGuGCAGcu--GCGCCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 83270 0.71 0.610065
Target:  5'- --gACGCGCGgaaCGGCGCGGCggcucCGCGCu -3'
miRNA:   3'- gcaUGUGUGCa--GCUGCGCCG-----GCGUGu -5'
21206 3' -56.9 NC_004778.3 + 24263 0.66 0.870327
Target:  5'- cCGUACucgaaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG--------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 38304 0.66 0.870327
Target:  5'- --cGCGCACG-CGAcCGCGcGCCGaGCAc -3'
miRNA:   3'- gcaUGUGUGCaGCU-GCGC-CGGCgUGU- -5'
21206 3' -56.9 NC_004778.3 + 112410 0.66 0.876834
Target:  5'- aGgcgGCACGuaguaaucaucuuCGcUCGACGCGGgCCGCAg- -3'
miRNA:   3'- gCa--UGUGU-------------GC-AGCUGCGCC-GGCGUgu -5'
21206 3' -56.9 NC_004778.3 + 64660 0.66 0.877546
Target:  5'- cCGUGCGCuuuCaaCGGCGCGGgCCaCACAu -3'
miRNA:   3'- -GCAUGUGu--GcaGCUGCGCC-GGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 82378 0.66 0.877546
Target:  5'- uGUAguCAUGUCGAUgggaGUGGCCgGCAUu -3'
miRNA:   3'- gCAUguGUGCAGCUG----CGCCGG-CGUGu -5'
21206 3' -56.9 NC_004778.3 + 105198 0.66 0.877546
Target:  5'- uGUGgACaaACG-CGGCGCcGUCGCACAa -3'
miRNA:   3'- gCAUgUG--UGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 49307 0.66 0.847428
Target:  5'- gCGcgGCGCG-GUCauugGACGCGGCgcCGCACAa -3'
miRNA:   3'- -GCa-UGUGUgCAG----CUGCGCCG--GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 117687 0.66 0.8394
Target:  5'- uGUGCGC-CGUgGAC-CGGCCGUc-- -3'
miRNA:   3'- gCAUGUGuGCAgCUGcGCCGGCGugu -5'
21206 3' -56.9 NC_004778.3 + 95309 0.66 0.8394
Target:  5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3'
miRNA:   3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 90643 0.67 0.805502
Target:  5'- aCGUuuGCGCACGcCGucaacgucaGCGCGGUCGaCGCu -3'
miRNA:   3'- -GCA--UGUGUGCaGC---------UGCGCCGGC-GUGu -5'
21206 3' -56.9 NC_004778.3 + 10267 0.67 0.805502
Target:  5'- -uUGCGCGCGg-GAC-CGGCgGCGCAu -3'
miRNA:   3'- gcAUGUGUGCagCUGcGCCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 70322 0.67 0.79662
Target:  5'- aCGgacgACAUGCaGUUGcACGCGGCC-CACAu -3'
miRNA:   3'- -GCa---UGUGUG-CAGC-UGCGCCGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 43138 0.67 0.79662
Target:  5'- --gGCGC-CG-CGGCGC-GCCGCACGu -3'
miRNA:   3'- gcaUGUGuGCaGCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 64770 0.67 0.793025
Target:  5'- cCGUGCACACGgcgccgauggccaaUaugcuuguucgggCGACGCGcGCUGCGCc -3'
miRNA:   3'- -GCAUGUGUGC--------------A-------------GCUGCGC-CGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 14529 0.68 0.769126
Target:  5'- gCGUGCGuCACGUCGuGC-CGGacgaCCGCGCGu -3'
miRNA:   3'- -GCAUGU-GUGCAGC-UGcGCC----GGCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.