miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21206 3' -56.9 NC_004778.3 + 115335 0.66 0.862898
Target:  5'- aCG-ACGCugGUCu-CGCGGuuGCAa- -3'
miRNA:   3'- -GCaUGUGugCAGcuGCGCCggCGUgu -5'
21206 3' -56.9 NC_004778.3 + 23868 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 24065 0.66 0.862143
Target:  5'- cCGUACucgaaaaGCGCgGUCGGCGCuGaCGCACGu -3'
miRNA:   3'- -GCAUG-------UGUG-CAGCUGCGcCgGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 7646 0.66 0.855262
Target:  5'- -uUACGCGCGgcaaUGAUGU-GCCGCGCAu -3'
miRNA:   3'- gcAUGUGUGCa---GCUGCGcCGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 95778 0.66 0.855262
Target:  5'- ---cCGCGCGgcagCG-CGcCGGCCGCGCu -3'
miRNA:   3'- gcauGUGUGCa---GCuGC-GCCGGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 64154 0.66 0.855262
Target:  5'- ----aGCGCGUCGcgccCGUGGCCGC-CGa -3'
miRNA:   3'- gcaugUGUGCAGCu---GCGCCGGCGuGU- -5'
21206 3' -56.9 NC_004778.3 + 73505 0.66 0.854488
Target:  5'- gCGUGCACGC-UCGuguacacGCGCaauucGGCgGCGCAg -3'
miRNA:   3'- -GCAUGUGUGcAGC-------UGCG-----CCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 71313 0.66 0.854488
Target:  5'- -uUGCAgGCGUCGGCGCguuuaacucguggGGCUcgagGCGCGg -3'
miRNA:   3'- gcAUGUgUGCAGCUGCG-------------CCGG----CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 68076 0.66 0.847428
Target:  5'- gCG-ACgACGCGcCGGCGCcGuCCGCACAu -3'
miRNA:   3'- -GCaUG-UGUGCaGCUGCGcC-GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 21746 0.66 0.847428
Target:  5'- --gAC-CGCG-CGugGCGGCCuccacGCGCAa -3'
miRNA:   3'- gcaUGuGUGCaGCugCGCCGG-----CGUGU- -5'
21206 3' -56.9 NC_004778.3 + 49307 0.66 0.847428
Target:  5'- gCGcgGCGCG-GUCauugGACGCGGCgcCGCACAa -3'
miRNA:   3'- -GCa-UGUGUgCAG----CUGCGCCG--GCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 117687 0.66 0.8394
Target:  5'- uGUGCGC-CGUgGAC-CGGCCGUc-- -3'
miRNA:   3'- gCAUGUGuGCAgCUGcGCCGGCGugu -5'
21206 3' -56.9 NC_004778.3 + 95309 0.66 0.8394
Target:  5'- uGUGCACAUGcUCG-CGuuGCgGCACGu -3'
miRNA:   3'- gCAUGUGUGC-AGCuGCgcCGgCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 34170 0.66 0.8394
Target:  5'- --aGCACGCGUuagCGACgguGCGGUCGcCGCGg -3'
miRNA:   3'- gcaUGUGUGCA---GCUG---CGCCGGC-GUGU- -5'
21206 3' -56.9 NC_004778.3 + 122617 0.67 0.831186
Target:  5'- aGgggGCGCcCGUCGugGUGuuuCCGCGCGa -3'
miRNA:   3'- gCa--UGUGuGCAGCugCGCc--GGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 108444 0.67 0.831186
Target:  5'- aGUGCACACGgaucgCGAUGaccuCGGCUuaACAg -3'
miRNA:   3'- gCAUGUGUGCa----GCUGC----GCCGGcgUGU- -5'
21206 3' -56.9 NC_004778.3 + 58386 0.67 0.831186
Target:  5'- uGUGCA-GCGgcugGACGCGGCCuCGCGa -3'
miRNA:   3'- gCAUGUgUGCag--CUGCGCCGGcGUGU- -5'
21206 3' -56.9 NC_004778.3 + 119190 0.67 0.831186
Target:  5'- --cGCGCGCaaUCGGCGCG-CUGCGCAc -3'
miRNA:   3'- gcaUGUGUGc-AGCUGCGCcGGCGUGU- -5'
21206 3' -56.9 NC_004778.3 + 88346 0.67 0.830355
Target:  5'- gCGUGCugcacaaAUGCGUCGugGUGGuguugggcaCCGCGCu -3'
miRNA:   3'- -GCAUG-------UGUGCAGCugCGCC---------GGCGUGu -5'
21206 3' -56.9 NC_004778.3 + 91596 0.67 0.822793
Target:  5'- gCGU--GCGCGUCGAuaagcaccaCGCGugucGCCGCGCGc -3'
miRNA:   3'- -GCAugUGUGCAGCU---------GCGC----CGGCGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.