miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21208 3' -54.7 NC_004778.3 + 86309 0.66 0.898384
Target:  5'- ---uGCGGCGC----GCCGCGGCGCc -3'
miRNA:   3'- cguuCGCCGUGuuguCGGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 33210 0.66 0.897718
Target:  5'- cGCGcucGGCcgGGCGCAaguccgcACAaCCGCAGCACu -3'
miRNA:   3'- -CGU---UCG--CCGUGU-------UGUcGGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 26016 0.66 0.896378
Target:  5'- aGCAacguccgccaacauGGCGGCACGACGuguccGCCAaa-CACGa -3'
miRNA:   3'- -CGU--------------UCGCCGUGUUGU-----CGGUgucGUGC- -5'
21208 3' -54.7 NC_004778.3 + 78575 0.66 0.891614
Target:  5'- aGCAAGC-GCAC---GGCCaACAGCAUa -3'
miRNA:   3'- -CGUUCGcCGUGuugUCGG-UGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 94496 0.66 0.891614
Target:  5'- uGCAAcGuUGGCACAAUAacgacGCCGCcGCGCa -3'
miRNA:   3'- -CGUU-C-GCCGUGUUGU-----CGGUGuCGUGc -5'
21208 3' -54.7 NC_004778.3 + 34655 0.67 0.884604
Target:  5'- aCGAGCccgGGCcgcagGCAACuGCacaGCAGCGCGa -3'
miRNA:   3'- cGUUCG---CCG-----UGUUGuCGg--UGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 102696 0.67 0.884604
Target:  5'- aGCGAGUucccGCGCuGCAgGCCGCGGCguuuGCGg -3'
miRNA:   3'- -CGUUCGc---CGUGuUGU-CGGUGUCG----UGC- -5'
21208 3' -54.7 NC_004778.3 + 75702 0.67 0.884604
Target:  5'- uGCAAcuCGGUAUAAUuuGCgCGCAGCGCGc -3'
miRNA:   3'- -CGUUc-GCCGUGUUGu-CG-GUGUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 29166 0.67 0.884604
Target:  5'- cGCGAGCGcGUGacGCuGCCACGGguCGu -3'
miRNA:   3'- -CGUUCGC-CGUguUGuCGGUGUCguGC- -5'
21208 3' -54.7 NC_004778.3 + 46749 0.67 0.884604
Target:  5'- --uAGCGG-GCAGCGGCC--AGCGCGu -3'
miRNA:   3'- cguUCGCCgUGUUGUCGGugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 81299 0.67 0.88389
Target:  5'- cGCAcGGCGGCGCGGauuGCCccuguuuguugcuGCAGCAg- -3'
miRNA:   3'- -CGU-UCGCCGUGUUgu-CGG-------------UGUCGUgc -5'
21208 3' -54.7 NC_004778.3 + 12767 0.67 0.880284
Target:  5'- aCAAGCGGUugacagACAgaaugcugagaaugcGCAGUUugGGCGCGu -3'
miRNA:   3'- cGUUCGCCG------UGU---------------UGUCGGugUCGUGC- -5'
21208 3' -54.7 NC_004778.3 + 21010 0.67 0.880284
Target:  5'- aGCccGCGGCGCAccagcgcguccaccuGC-GCCGCGGCAa- -3'
miRNA:   3'- -CGuuCGCCGUGU---------------UGuCGGUGUCGUgc -5'
21208 3' -54.7 NC_004778.3 + 87919 0.67 0.877357
Target:  5'- cGCAcaucGCauGCGCAACAGCCACuguuuacguuguAGCGCu -3'
miRNA:   3'- -CGUu---CGc-CGUGUUGUCGGUG------------UCGUGc -5'
21208 3' -54.7 NC_004778.3 + 97138 0.67 0.877357
Target:  5'- -aGAGCGGCcuggacuuuaaGCAcCAGCCcgacACGGCGCc -3'
miRNA:   3'- cgUUCGCCG-----------UGUuGUCGG----UGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 53117 0.67 0.877357
Target:  5'- aCGAGCGGgACGAC-GCacaggaaACGGCGCu -3'
miRNA:   3'- cGUUCGCCgUGUUGuCGg------UGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 81855 0.67 0.877357
Target:  5'- cGgGAGCGGCgGCggUAGaCCAUGGUGCu -3'
miRNA:   3'- -CgUUCGCCG-UGuuGUC-GGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 47371 0.67 0.877357
Target:  5'- aGCGuGCGGCguuauuuugggcGCGACGuGUCGCAcGCGCGc -3'
miRNA:   3'- -CGUuCGCCG------------UGUUGU-CGGUGU-CGUGC- -5'
21208 3' -54.7 NC_004778.3 + 125969 0.67 0.877357
Target:  5'- -aAGGCGGCGg---AGCUGCAGCGCa -3'
miRNA:   3'- cgUUCGCCGUguugUCGGUGUCGUGc -5'
21208 3' -54.7 NC_004778.3 + 103551 0.67 0.877357
Target:  5'- aCGAGCGuGC-CAGCGcCCACGGuCGCGc -3'
miRNA:   3'- cGUUCGC-CGuGUUGUcGGUGUC-GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.