miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21209 3' -59 NC_004778.3 + 29337 0.67 0.62944
Target:  5'- --gCGGCGCGCGCUggGGUGCgccaagcgGCUGUa -3'
miRNA:   3'- aagGUCGUGCGCGG--CCGUGaa------CGACG- -5'
21209 3' -59 NC_004778.3 + 62681 0.67 0.62944
Target:  5'- uUUUguGCACGUaGUCGGUgcACUUGUUGUa -3'
miRNA:   3'- -AAGguCGUGCG-CGGCCG--UGAACGACG- -5'
21209 3' -59 NC_004778.3 + 106448 0.67 0.619111
Target:  5'- gUCCA--ACGCGCUGaGCGC--GCUGCg -3'
miRNA:   3'- aAGGUcgUGCGCGGC-CGUGaaCGACG- -5'
21209 3' -59 NC_004778.3 + 122089 0.67 0.619111
Target:  5'- -aCCGGCACGCGCauuCGGaC-CUUG-UGCg -3'
miRNA:   3'- aaGGUCGUGCGCG---GCC-GuGAACgACG- -5'
21209 3' -59 NC_004778.3 + 114053 0.67 0.608792
Target:  5'- cUCCAGUgggGCggauugugaGCGUCGGCGaaagcgguguCUUGCUGCc -3'
miRNA:   3'- aAGGUCG---UG---------CGCGGCCGU----------GAACGACG- -5'
21209 3' -59 NC_004778.3 + 52520 0.67 0.608792
Target:  5'- -gCCAGC-CG-GCCGGCcaACUgcgUGUUGCa -3'
miRNA:   3'- aaGGUCGuGCgCGGCCG--UGA---ACGACG- -5'
21209 3' -59 NC_004778.3 + 46967 0.67 0.608792
Target:  5'- --gCAGCGaaaGCGCCGGCGCUcacGCcgacGCg -3'
miRNA:   3'- aagGUCGUg--CGCGGCCGUGAa--CGa---CG- -5'
21209 3' -59 NC_004778.3 + 25587 0.67 0.6057
Target:  5'- -aUCAGUAUGCugGCCGGC-CUgccgacacugacgcUGCUGCu -3'
miRNA:   3'- aaGGUCGUGCG--CGGCCGuGA--------------ACGACG- -5'
21209 3' -59 NC_004778.3 + 7151 0.68 0.598492
Target:  5'- gUCuCGGCgggcgGCGCGCCGaGCACUaGCUcGUu -3'
miRNA:   3'- aAG-GUCG-----UGCGCGGC-CGUGAaCGA-CG- -5'
21209 3' -59 NC_004778.3 + 38875 0.68 0.598492
Target:  5'- -aUCGGCGCuGCGCuCGGCgGCgagcGCUGCc -3'
miRNA:   3'- aaGGUCGUG-CGCG-GCCG-UGaa--CGACG- -5'
21209 3' -59 NC_004778.3 + 7058 0.68 0.597463
Target:  5'- -gCCAGCAacacguccuccuuCGCGUccaaCGGCAacUGCUGCa -3'
miRNA:   3'- aaGGUCGU-------------GCGCG----GCCGUgaACGACG- -5'
21209 3' -59 NC_004778.3 + 129136 0.68 0.588216
Target:  5'- -gCCAGCACGCGCUcagguGGgACUgcgauuacgUGCcGCa -3'
miRNA:   3'- aaGGUCGUGCGCGG-----CCgUGA---------ACGaCG- -5'
21209 3' -59 NC_004778.3 + 40526 0.68 0.588216
Target:  5'- -gCCGGCGCGuCGCauucauuGGCGCgacuuugguaaUGCUGCa -3'
miRNA:   3'- aaGGUCGUGC-GCGg------CCGUGa----------ACGACG- -5'
21209 3' -59 NC_004778.3 + 16306 0.68 0.577972
Target:  5'- -gCCGGCAgGCGUCGGCGUgauaaCUGCg -3'
miRNA:   3'- aaGGUCGUgCGCGGCCGUGaac--GACG- -5'
21209 3' -59 NC_004778.3 + 55929 0.68 0.577972
Target:  5'- -gCCAGCACuuuuaaGuuGGCaaagcauuccACUUGCUGCa -3'
miRNA:   3'- aaGGUCGUGcg----CggCCG----------UGAACGACG- -5'
21209 3' -59 NC_004778.3 + 121714 0.68 0.577972
Target:  5'- gUCgGGCACGuUGUCGGCGCgccguaGCUGg -3'
miRNA:   3'- aAGgUCGUGC-GCGGCCGUGaa----CGACg -5'
21209 3' -59 NC_004778.3 + 112046 0.68 0.577972
Target:  5'- -cCCAGCGCGC-CCGGCaacaGCUUGaCcGUa -3'
miRNA:   3'- aaGGUCGUGCGcGGCCG----UGAAC-GaCG- -5'
21209 3' -59 NC_004778.3 + 2539 0.68 0.571845
Target:  5'- gUCCAGCAUgcgGCGCCGccaGCAguacaacgacauuacCUUGCUGa -3'
miRNA:   3'- aAGGUCGUG---CGCGGC---CGU---------------GAACGACg -5'
21209 3' -59 NC_004778.3 + 307 0.68 0.557611
Target:  5'- gUCCcaccugAGCGCGUGCUGGCGCaagaauUUGUaGCa -3'
miRNA:   3'- aAGG------UCGUGCGCGGCCGUG------AACGaCG- -5'
21209 3' -59 NC_004778.3 + 124562 0.68 0.547506
Target:  5'- --aCAGCGCGCGCCGaGuCACguagGC-GCg -3'
miRNA:   3'- aagGUCGUGCGCGGC-C-GUGaa--CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.