miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 3' -54.9 NC_004778.3 + 5351 0.66 0.923592
Target:  5'- -----gGAGGC-CgCCAACCGCGCG-Ca -3'
miRNA:   3'- gacaaaCUCUGcG-GGUUGGCGCGCaG- -5'
21211 3' -54.9 NC_004778.3 + 38758 0.66 0.923592
Target:  5'- gCUGgcUGGGcACGCCgAGaaguaCGCaGCGUCg -3'
miRNA:   3'- -GACaaACUC-UGCGGgUUg----GCG-CGCAG- -5'
21211 3' -54.9 NC_004778.3 + 6847 0.66 0.923592
Target:  5'- cCUGUgUG-GACGCa-GGCgGCGCGUUg -3'
miRNA:   3'- -GACAaACuCUGCGggUUGgCGCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 96227 0.66 0.917898
Target:  5'- uUGUgcgGAcuuGCGCCCGGCCgaGCGCGa- -3'
miRNA:   3'- gACAaa-CUc--UGCGGGUUGG--CGCGCag -5'
21211 3' -54.9 NC_004778.3 + 64124 0.67 0.878622
Target:  5'- -aGUUUaGcGGCGCCCAAgCaacggucacucaGCGCGUCg -3'
miRNA:   3'- gaCAAA-CuCUGCGGGUUgG------------CGCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 1677 0.67 0.878622
Target:  5'- -gGUUUGGGuGCGgCCAGCaGCGCGa- -3'
miRNA:   3'- gaCAAACUC-UGCgGGUUGgCGCGCag -5'
21211 3' -54.9 NC_004778.3 + 122618 0.67 0.878622
Target:  5'- -----gGGGGCGCCCGucgugguguuuCCGCGCGa- -3'
miRNA:   3'- gacaaaCUCUGCGGGUu----------GGCGCGCag -5'
21211 3' -54.9 NC_004778.3 + 90928 0.67 0.871253
Target:  5'- -aGUUUGcaaggcauGGACGCCgAACgCGuCGCGUUa -3'
miRNA:   3'- gaCAAAC--------UCUGCGGgUUG-GC-GCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 94982 0.68 0.847837
Target:  5'- gCUGUUcgacGAGGCGUUCuuuCCGCGCG-Cg -3'
miRNA:   3'- -GACAAa---CUCUGCGGGuu-GGCGCGCaG- -5'
21211 3' -54.9 NC_004778.3 + 93559 0.68 0.847837
Target:  5'- uUGUUgGAGAUGUCCGaacuGCCGUGCa-- -3'
miRNA:   3'- gACAAaCUCUGCGGGU----UGGCGCGcag -5'
21211 3' -54.9 NC_004778.3 + 9466 0.68 0.847837
Target:  5'- -cGUagGGGuuGCGCUCuGCCuGCGCGUCg -3'
miRNA:   3'- gaCAaaCUC--UGCGGGuUGG-CGCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 81452 0.68 0.839616
Target:  5'- aUGUcUGuuGCGCgCGugCGCGCGUa -3'
miRNA:   3'- gACAaACucUGCGgGUugGCGCGCAg -5'
21211 3' -54.9 NC_004778.3 + 65282 0.68 0.839616
Target:  5'- -cGUgauGGACGCCC-ACCGCGCc-- -3'
miRNA:   3'- gaCAaacUCUGCGGGuUGGCGCGcag -5'
21211 3' -54.9 NC_004778.3 + 2317 0.68 0.81381
Target:  5'- -----cGGGGCGCgCGAUCGCGUGUa -3'
miRNA:   3'- gacaaaCUCUGCGgGUUGGCGCGCAg -5'
21211 3' -54.9 NC_004778.3 + 96058 0.69 0.77705
Target:  5'- ---gUUGGGcGCGUCCAaagACgGCGCGUCg -3'
miRNA:   3'- gacaAACUC-UGCGGGU---UGgCGCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 82606 0.69 0.77705
Target:  5'- gUGUUggaUGAGGCGgCgAGCCGCcgcgcgauaGCGUCg -3'
miRNA:   3'- gACAA---ACUCUGCgGgUUGGCG---------CGCAG- -5'
21211 3' -54.9 NC_004778.3 + 69791 0.69 0.7675
Target:  5'- -----aGAGGCGgCCGugccucgcgACCGCGUGUCg -3'
miRNA:   3'- gacaaaCUCUGCgGGU---------UGGCGCGCAG- -5'
21211 3' -54.9 NC_004778.3 + 105358 0.7 0.748034
Target:  5'- --aUUUGAGACGUgcgucagcgCCGACCGCGCu-- -3'
miRNA:   3'- gacAAACUCUGCG---------GGUUGGCGCGcag -5'
21211 3' -54.9 NC_004778.3 + 105556 0.7 0.748034
Target:  5'- --aUUUGAGACGUgcgucagcgCCGACCGCGCu-- -3'
miRNA:   3'- gacAAACUCUGCG---------GGUUGGCGCGcag -5'
21211 3' -54.9 NC_004778.3 + 105159 0.7 0.748034
Target:  5'- --aUUUGAGACGUgcgucagcgCCGACCGCGCu-- -3'
miRNA:   3'- gacAAACUCUGCG---------GGUUGGCGCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.