miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21211 5' -47.6 NC_004778.3 + 63328 0.67 0.998195
Target:  5'- uUGcUGUGCGAcUUGUCGGCGUUGAAc -3'
miRNA:   3'- gGCuGCGCGUUuAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 117449 0.67 0.997823
Target:  5'- gCGGCGCgGCAGcggccUGCC-ACGUUGAc -3'
miRNA:   3'- gGCUGCG-CGUUua---ACGGuUGUAACUu -5'
21211 5' -47.6 NC_004778.3 + 40444 0.67 0.997823
Target:  5'- gCCGGCGUGCAAAcUGCuCAugAa---- -3'
miRNA:   3'- -GGCUGCGCGUUUaACG-GUugUaacuu -5'
21211 5' -47.6 NC_004778.3 + 40822 0.67 0.997823
Target:  5'- -aGACGCGCAGAcgcUGCUGcACAUUGc- -3'
miRNA:   3'- ggCUGCGCGUUUa--ACGGU-UGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 125837 0.67 0.99739
Target:  5'- aCgGACGUGCcuguUUGCCAGCAauuuugUGAc -3'
miRNA:   3'- -GgCUGCGCGuuu-AACGGUUGUa-----ACUu -5'
21211 5' -47.6 NC_004778.3 + 9487 0.67 0.99739
Target:  5'- uUGGCGaGguGAUUGCCGACGcgGAGg -3'
miRNA:   3'- gGCUGCgCguUUAACGGUUGUaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 2283 0.67 0.996886
Target:  5'- gCGACGCGCuc-UUGgCAGCAUgcaUGGu -3'
miRNA:   3'- gGCUGCGCGuuuAACgGUUGUA---ACUu -5'
21211 5' -47.6 NC_004778.3 + 53817 0.68 0.996305
Target:  5'- -gGACGCGCGAGUgcgGCuCAACGa---- -3'
miRNA:   3'- ggCUGCGCGUUUAa--CG-GUUGUaacuu -5'
21211 5' -47.6 NC_004778.3 + 83965 0.68 0.996243
Target:  5'- aCGGucCGCGCGAGUUGCCcgaccgcGGCAgcGAGu -3'
miRNA:   3'- gGCU--GCGCGUUUAACGG-------UUGUaaCUU- -5'
21211 5' -47.6 NC_004778.3 + 39804 0.68 0.995638
Target:  5'- uUGcACGCGCcGAUUGUCGGCGcgUGGAa -3'
miRNA:   3'- gGC-UGCGCGuUUAACGGUUGUa-ACUU- -5'
21211 5' -47.6 NC_004778.3 + 43291 0.68 0.995638
Target:  5'- cUCGAuuUGCGCAAAcgGCCcgugcGCGUUGAAc -3'
miRNA:   3'- -GGCU--GCGCGUUUaaCGGu----UGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 14550 0.68 0.994876
Target:  5'- aCGAcCGCGCGuccAUgugcGCCAGCAUUGu- -3'
miRNA:   3'- gGCU-GCGCGUu--UAa---CGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 21615 0.68 0.994009
Target:  5'- aUCGGCaaaCAAAUUGUCGACGUUGAAc -3'
miRNA:   3'- -GGCUGcgcGUUUAACGGUUGUAACUU- -5'
21211 5' -47.6 NC_004778.3 + 89337 0.68 0.994009
Target:  5'- uCCGugG-GCcGAUUGCCGACGUc--- -3'
miRNA:   3'- -GGCugCgCGuUUAACGGUUGUAacuu -5'
21211 5' -47.6 NC_004778.3 + 22501 0.68 0.993434
Target:  5'- gCCGACGCGU---UUGCCAuauuugcccgaggccGCcUUGAAu -3'
miRNA:   3'- -GGCUGCGCGuuuAACGGU---------------UGuAACUU- -5'
21211 5' -47.6 NC_004778.3 + 34942 0.68 0.993028
Target:  5'- gCGGCGuCGUuauugUGCCAACGUUGc- -3'
miRNA:   3'- gGCUGC-GCGuuua-ACGGUUGUAACuu -5'
21211 5' -47.6 NC_004778.3 + 52834 0.69 0.990682
Target:  5'- cCCGACGC-CA---UGCCGGCGcUGAu -3'
miRNA:   3'- -GGCUGCGcGUuuaACGGUUGUaACUu -5'
21211 5' -47.6 NC_004778.3 + 114230 0.69 0.990682
Target:  5'- gUGGCGCGCGGuUUGcCCGGC-UUGAu -3'
miRNA:   3'- gGCUGCGCGUUuAAC-GGUUGuAACUu -5'
21211 5' -47.6 NC_004778.3 + 102918 0.69 0.989297
Target:  5'- gCCGGCGCcCAAcUUGCCuuuUAUUGAc -3'
miRNA:   3'- -GGCUGCGcGUUuAACGGuu-GUAACUu -5'
21211 5' -47.6 NC_004778.3 + 21082 0.69 0.989297
Target:  5'- gCGugGCGUAGcUUGCCA-CGuUUGAAu -3'
miRNA:   3'- gGCugCGCGUUuAACGGUuGU-AACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.