miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21212 3' -55.7 NC_004778.3 + 64456 0.68 0.801703
Target:  5'- aACuaCACGUUCGACgccgaggccgGCGAaUGCCGAGu -3'
miRNA:   3'- -UGcgGUGCAAGCUGa---------CGCU-GCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 85452 0.68 0.801703
Target:  5'- cCGCCggccgcGCGUUgGGCgGCG-CGCCAAAg -3'
miRNA:   3'- uGCGG------UGCAAgCUGaCGCuGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 32679 0.68 0.792518
Target:  5'- cGCGCCGCGgca-GCUGCGcgucuACGCCGc- -3'
miRNA:   3'- -UGCGGUGCaagcUGACGC-----UGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 120584 0.68 0.792518
Target:  5'- -aGCU-CGUUgGaucGCUGCGACGCCAGc -3'
miRNA:   3'- ugCGGuGCAAgC---UGACGCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 47958 0.68 0.764096
Target:  5'- aGCGCCGCuuuGUUCGAaaGCacGCGCCAGu -3'
miRNA:   3'- -UGCGGUG---CAAGCUgaCGc-UGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 114011 0.68 0.754364
Target:  5'- gGCGCUGCGagcagugcUUUGAUaucgGCGGCGCCAAc -3'
miRNA:   3'- -UGCGGUGC--------AAGCUGa---CGCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 98186 0.69 0.744521
Target:  5'- -gGCCACGa--GGCacaccgGCGACGCCAAc -3'
miRNA:   3'- ugCGGUGCaagCUGa-----CGCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 37909 0.69 0.744521
Target:  5'- aACGUCAaug-CGcAUUGCGGCGCCAAAu -3'
miRNA:   3'- -UGCGGUgcaaGC-UGACGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 17176 0.69 0.744521
Target:  5'- cGCGCgggCACcg-CGACUGCacgGACGCCAAAa -3'
miRNA:   3'- -UGCG---GUGcaaGCUGACG---CUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 88238 0.69 0.734576
Target:  5'- cGCGaaaCCACGUgCGACgGUGugGCCAu- -3'
miRNA:   3'- -UGC---GGUGCAaGCUGaCGCugCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 118733 0.69 0.734576
Target:  5'- uGCGCUugGccUCGGCgcgGCGGCGCaCAc- -3'
miRNA:   3'- -UGCGGugCa-AGCUGa--CGCUGCG-GUuu -5'
21212 3' -55.7 NC_004778.3 + 33358 0.69 0.724538
Target:  5'- uCGCCGCGggCGACgucGCGgacgacGCGCCGu- -3'
miRNA:   3'- uGCGGUGCaaGCUGa--CGC------UGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 21094 0.69 0.724538
Target:  5'- uUGCCACGUUUGaAUUGUGcACGCCc-- -3'
miRNA:   3'- uGCGGUGCAAGC-UGACGC-UGCGGuuu -5'
21212 3' -55.7 NC_004778.3 + 38878 0.69 0.724538
Target:  5'- gGCGCUGCGcUCGGCgGCGAgcgcUGCCAc- -3'
miRNA:   3'- -UGCGGUGCaAGCUGaCGCU----GCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 61954 0.69 0.72151
Target:  5'- aACGCCGCGUUCucgaacaugucggGGCgcuugccgcugcGCGugGCCAAu -3'
miRNA:   3'- -UGCGGUGCAAG-------------CUGa-----------CGCugCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 99979 0.7 0.693965
Target:  5'- cACGCCACGcugUCGccauAUUGCGuauACGCCAGc -3'
miRNA:   3'- -UGCGGUGCa--AGC----UGACGC---UGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 61341 0.7 0.642059
Target:  5'- uACGCCGCagGUUCGGCUucaugugcgGaCGGCGCCGGc -3'
miRNA:   3'- -UGCGGUG--CAAGCUGA---------C-GCUGCGGUUu -5'
21212 3' -55.7 NC_004778.3 + 46795 0.72 0.56926
Target:  5'- aGCGCCAaGUccgcuuuggUCGACaUGCGACGCUAu- -3'
miRNA:   3'- -UGCGGUgCA---------AGCUG-ACGCUGCGGUuu -5'
21212 3' -55.7 NC_004778.3 + 120707 0.72 0.558986
Target:  5'- cGCGCCACGg-CGcCgGCGGCGUCAAAg -3'
miRNA:   3'- -UGCGGUGCaaGCuGaCGCUGCGGUUU- -5'
21212 3' -55.7 NC_004778.3 + 88383 0.73 0.498662
Target:  5'- cGCGCUggACGcgCGACUGCGAgcgguggaCGCCGAGu -3'
miRNA:   3'- -UGCGG--UGCaaGCUGACGCU--------GCGGUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.