miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21213 5' -61 NC_004778.3 + 27880 0.66 0.612852
Target:  5'- cGUUGCCuGGCACaccggucauugauUGGGCCgaUCGCAACUAc -3'
miRNA:   3'- -CAGCGG-UCGUG-------------GCCCGG--GGUGUUGAU- -5'
21213 5' -61 NC_004778.3 + 98876 0.66 0.603729
Target:  5'- uGUUGCgCGGCACgCGGGCUUucgaagcgaCACAACUc -3'
miRNA:   3'- -CAGCG-GUCGUG-GCCCGGG---------GUGUUGAu -5'
21213 5' -61 NC_004778.3 + 81911 0.66 0.597655
Target:  5'- uGUCGCCgucgcagucgguguuGGCGCCGGgaaaaaugcccaGCCCCACcuuuACg- -3'
miRNA:   3'- -CAGCGG---------------UCGUGGCC------------CGGGGUGu---UGau -5'
21213 5' -61 NC_004778.3 + 106291 0.66 0.593611
Target:  5'- aUCGUCAGCGCCcGuGCCCgcCGCAGCc- -3'
miRNA:   3'- cAGCGGUCGUGGcC-CGGG--GUGUUGau -5'
21213 5' -61 NC_004778.3 + 110899 0.66 0.593611
Target:  5'- --gGCCAGCGCCuGGC-CCACGAg-- -3'
miRNA:   3'- cagCGGUCGUGGcCCGgGGUGUUgau -5'
21213 5' -61 NC_004778.3 + 57120 0.66 0.593611
Target:  5'- -aCGgCGGUGCUGGGCCCCGacggAACg- -3'
miRNA:   3'- caGCgGUCGUGGCCCGGGGUg---UUGau -5'
21213 5' -61 NC_004778.3 + 129435 0.66 0.583521
Target:  5'- -gCGCCucuguuCACCGGGCCCgCAU-ACUAa -3'
miRNA:   3'- caGCGGuc----GUGGCCCGGG-GUGuUGAU- -5'
21213 5' -61 NC_004778.3 + 19137 0.67 0.573465
Target:  5'- uGUgGCCAGCAaaaGGCCCCgGCAACc- -3'
miRNA:   3'- -CAgCGGUCGUggcCCGGGG-UGUUGau -5'
21213 5' -61 NC_004778.3 + 8741 0.67 0.553484
Target:  5'- -cCGCCGGCGCCGuGGCgCgCCACcccguccACUAc -3'
miRNA:   3'- caGCGGUCGUGGC-CCG-G-GGUGu------UGAU- -5'
21213 5' -61 NC_004778.3 + 31760 0.67 0.553484
Target:  5'- cGUCGCCAGCuccaaCGGGUUgUAUAGCg- -3'
miRNA:   3'- -CAGCGGUCGug---GCCCGGgGUGUUGau -5'
21213 5' -61 NC_004778.3 + 27698 0.67 0.533714
Target:  5'- cGUgGCCAGUGCCGcguucGCCCUGCuGCUAu -3'
miRNA:   3'- -CAgCGGUCGUGGCc----CGGGGUGuUGAU- -5'
21213 5' -61 NC_004778.3 + 94789 0.68 0.494987
Target:  5'- aGUUGCCuGCGgcCCGGGCUCggaCGCAACUc -3'
miRNA:   3'- -CAGCGGuCGU--GGCCCGGG---GUGUUGAu -5'
21213 5' -61 NC_004778.3 + 61351 0.7 0.404482
Target:  5'- cGUCGCUGGCGCuCGGGCUguucgaaCACAGCc- -3'
miRNA:   3'- -CAGCGGUCGUG-GCCCGGg------GUGUUGau -5'
21213 5' -61 NC_004778.3 + 49818 0.72 0.274909
Target:  5'- -cCGCUuuuuguuuccguaaAGCACUGGGCCCCGCAcggGCg- -3'
miRNA:   3'- caGCGG--------------UCGUGGCCCGGGGUGU---UGau -5'
21213 5' -61 NC_004778.3 + 100252 0.72 0.270433
Target:  5'- -gUGCCGGUcaCGGGCCCgGCAGCUGu -3'
miRNA:   3'- caGCGGUCGugGCCCGGGgUGUUGAU- -5'
21213 5' -61 NC_004778.3 + 90043 1.06 0.001127
Target:  5'- cGUCGCCAGCACCGGGCCCCACAACUAc -3'
miRNA:   3'- -CAGCGGUCGUGGCCCGGGGUGUUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.