miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21214 5' -60.1 NC_004778.3 + 57968 0.67 0.65398
Target:  5'- aCGcCCcCGCCGacaCCCUCGccuacGCCCCCGccgACa -3'
miRNA:   3'- -GCuGGuGCGGC---GGGAGU-----UGGGGGU---UG- -5'
21214 5' -60.1 NC_004778.3 + 90504 0.67 0.643944
Target:  5'- gCGACCACGCCGaUCCgcacgcgCAGCgcuaUCCCAu- -3'
miRNA:   3'- -GCUGGUGCGGC-GGGa------GUUG----GGGGUug -5'
21214 5' -60.1 NC_004778.3 + 41236 0.67 0.643944
Target:  5'- gCGGCCGCGCCGg---CAACCCCa--- -3'
miRNA:   3'- -GCUGGUGCGGCgggaGUUGGGGguug -5'
21214 5' -60.1 NC_004778.3 + 17616 0.67 0.643944
Target:  5'- uGACUauACGgCGCCCUC-GCCCuuguuaCCGGCg -3'
miRNA:   3'- gCUGG--UGCgGCGGGAGuUGGG------GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 27198 0.67 0.633899
Target:  5'- uCGGCCuguAUGCCGCCCauguUCAugacgGCCUCgAACg -3'
miRNA:   3'- -GCUGG---UGCGGCGGG----AGU-----UGGGGgUUG- -5'
21214 5' -60.1 NC_004778.3 + 80059 0.67 0.623853
Target:  5'- gCGGCgCugGCCgGCCC-CAACuaCCUCGACu -3'
miRNA:   3'- -GCUG-GugCGG-CGGGaGUUG--GGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 47594 0.67 0.613813
Target:  5'- -uACCGcCGCCGCUCcCGAUCCgCCAAUg -3'
miRNA:   3'- gcUGGU-GCGGCGGGaGUUGGG-GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 100703 0.68 0.603786
Target:  5'- -cGCCuuUGCCGCCCggaAACUCCCAGu -3'
miRNA:   3'- gcUGGu-GCGGCGGGag-UUGGGGGUUg -5'
21214 5' -60.1 NC_004778.3 + 121433 0.68 0.59378
Target:  5'- uCGGCCGuguCGCCGCCgUCGGCgCCgCGcACa -3'
miRNA:   3'- -GCUGGU---GCGGCGGgAGUUG-GGgGU-UG- -5'
21214 5' -60.1 NC_004778.3 + 27496 0.68 0.59378
Target:  5'- cCGACCACaugGCCGUgUUCGacgaauACCCCgGGCu -3'
miRNA:   3'- -GCUGGUG---CGGCGgGAGU------UGGGGgUUG- -5'
21214 5' -60.1 NC_004778.3 + 102635 0.68 0.573854
Target:  5'- --cCCGCGCgGCCCagCAACCUCUAucGCa -3'
miRNA:   3'- gcuGGUGCGgCGGGa-GUUGGGGGU--UG- -5'
21214 5' -60.1 NC_004778.3 + 56931 0.68 0.573854
Target:  5'- gCGuCCGCGUCGUCgacgCUCAACgCCaCCGACg -3'
miRNA:   3'- -GCuGGUGCGGCGG----GAGUUG-GG-GGUUG- -5'
21214 5' -60.1 NC_004778.3 + 15740 0.68 0.554088
Target:  5'- aGugUugGCCGCCCgCAACCUa-AGCu -3'
miRNA:   3'- gCugGugCGGCGGGaGUUGGGggUUG- -5'
21214 5' -60.1 NC_004778.3 + 98765 0.68 0.554088
Target:  5'- gCGugCAaGCCGCCacc-AUCCCCAGCg -3'
miRNA:   3'- -GCugGUgCGGCGGgaguUGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 83101 0.68 0.553105
Target:  5'- uCGACCagcuugcGCGCCGCgaUCGACUgguuaCCCAACg -3'
miRNA:   3'- -GCUGG-------UGCGGCGggAGUUGG-----GGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 58205 0.69 0.534528
Target:  5'- cCGACacccuCGCCGacaCCCUCGccuacGCCCUCGGCg -3'
miRNA:   3'- -GCUGgu---GCGGC---GGGAGU-----UGGGGGUUG- -5'
21214 5' -60.1 NC_004778.3 + 93130 0.69 0.528707
Target:  5'- aCGACCACGCCcuccggacugcccacGUUCUCAaugGCCCUCGu- -3'
miRNA:   3'- -GCUGGUGCGG---------------CGGGAGU---UGGGGGUug -5'
21214 5' -60.1 NC_004778.3 + 101998 0.69 0.515218
Target:  5'- gGACCGC-CCGCCCgauaaagGACCCCuCGAa -3'
miRNA:   3'- gCUGGUGcGGCGGGag-----UUGGGG-GUUg -5'
21214 5' -60.1 NC_004778.3 + 128175 0.69 0.505668
Target:  5'- ---aCACGCCGCCgUCGuCCCCacaAGCg -3'
miRNA:   3'- gcugGUGCGGCGGgAGUuGGGGg--UUG- -5'
21214 5' -60.1 NC_004778.3 + 115450 0.69 0.496196
Target:  5'- aGACCGCGCCcggGUCCUCAcauACCUCgCuGCa -3'
miRNA:   3'- gCUGGUGCGG---CGGGAGU---UGGGG-GuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.