miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21215 3' -57.7 NC_004778.3 + 114349 0.66 0.809716
Target:  5'- --uGAGCGguuUGacccuGCGCGCCGCGG-GCg -3'
miRNA:   3'- guuUUUGC---ACgc---CGCGCGGCGCCgCG- -5'
21215 3' -57.7 NC_004778.3 + 82025 0.66 0.800889
Target:  5'- ---uGAUGUugggGUGGCGCGUgguccaCGCGcGCGCg -3'
miRNA:   3'- guuuUUGCA----CGCCGCGCG------GCGC-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 109116 0.66 0.800889
Target:  5'- -----cCGUGCGuuGUGCCGCcgauGGUGCc -3'
miRNA:   3'- guuuuuGCACGCcgCGCGGCG----CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 39951 0.66 0.800889
Target:  5'- aCAucuAACGUGaCGGCGUuuUCGCauuGGCGCg -3'
miRNA:   3'- -GUuu-UUGCAC-GCCGCGc-GGCG---CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 86061 0.66 0.800889
Target:  5'- -cAAAACGUaC-GCGUGCUGCGGCa- -3'
miRNA:   3'- guUUUUGCAcGcCGCGCGGCGCCGcg -5'
21215 3' -57.7 NC_004778.3 + 33079 0.66 0.800889
Target:  5'- ---cAACGgugcaGCGGCcCGCUGCcGCGCu -3'
miRNA:   3'- guuuUUGCa----CGCCGcGCGGCGcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 6853 0.66 0.791909
Target:  5'- --uGGACGcagGCGGCGCGuuGaucuuugaauCGaGCGCg -3'
miRNA:   3'- guuUUUGCa--CGCCGCGCggC----------GC-CGCG- -5'
21215 3' -57.7 NC_004778.3 + 122281 0.66 0.791909
Target:  5'- aCGAGcuaGUGCucGGCGCGCCGCc-CGCc -3'
miRNA:   3'- -GUUUuugCACG--CCGCGCGGCGccGCG- -5'
21215 3' -57.7 NC_004778.3 + 18078 0.66 0.791909
Target:  5'- ----cGCGUGaCGGUGCGCCuuuugGGCGa -3'
miRNA:   3'- guuuuUGCAC-GCCGCGCGGcg---CCGCg -5'
21215 3' -57.7 NC_004778.3 + 80125 0.66 0.791909
Target:  5'- -----uUGUGCGGCGCcgcguccaauGaCCGCGccGCGCu -3'
miRNA:   3'- guuuuuGCACGCCGCG----------C-GGCGC--CGCG- -5'
21215 3' -57.7 NC_004778.3 + 127186 0.66 0.791909
Target:  5'- cCGGAAACcugaaGCGGCGUacGuCCGCgGGCGUg -3'
miRNA:   3'- -GUUUUUGca---CGCCGCG--C-GGCG-CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 109825 0.66 0.791909
Target:  5'- --uAGACGUGUuuacGGCGa---GCGGCGCa -3'
miRNA:   3'- guuUUUGCACG----CCGCgcggCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 92875 0.66 0.791909
Target:  5'- cCGAGAACGgcuCGGCGUccagcuugaGCCGCaGCGa -3'
miRNA:   3'- -GUUUUUGCac-GCCGCG---------CGGCGcCGCg -5'
21215 3' -57.7 NC_004778.3 + 34920 0.66 0.791909
Target:  5'- --cAAGCGcaugGCauuGUGCGCgGCGGCGUc -3'
miRNA:   3'- guuUUUGCa---CGc--CGCGCGgCGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 56148 0.66 0.791003
Target:  5'- ----cGCGUGaCGGUcacuucguuggaaGCGCUG-GGCGCg -3'
miRNA:   3'- guuuuUGCAC-GCCG-------------CGCGGCgCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 71423 0.66 0.791003
Target:  5'- -cGAAACGUGCacgcaguGGCauGCGCuCGuuGCGCa -3'
miRNA:   3'- guUUUUGCACG-------CCG--CGCG-GCgcCGCG- -5'
21215 3' -57.7 NC_004778.3 + 114846 0.66 0.791003
Target:  5'- -cGAAACGUGUgugacgccguguuGGCGUccagGCCGUccacaaugcuGGCGCa -3'
miRNA:   3'- guUUUUGCACG-------------CCGCG----CGGCG----------CCGCG- -5'
21215 3' -57.7 NC_004778.3 + 25140 0.67 0.786453
Target:  5'- ----cACGUucuuGCGGCGCGUgcaaaccugcacguuCuuGCGGCGCa -3'
miRNA:   3'- guuuuUGCA----CGCCGCGCG---------------G--CGCCGCG- -5'
21215 3' -57.7 NC_004778.3 + 30398 0.67 0.782788
Target:  5'- gGAAAuUGUG-GGCgugaGCGCCGCGaCGCg -3'
miRNA:   3'- gUUUUuGCACgCCG----CGCGGCGCcGCG- -5'
21215 3' -57.7 NC_004778.3 + 63463 0.67 0.782788
Target:  5'- --uGGGCGUuCGGCgaaaGCGCCuucuuCGGCGCg -3'
miRNA:   3'- guuUUUGCAcGCCG----CGCGGc----GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.