miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21216 3' -54.1 NC_004778.3 + 56392 0.67 0.916117
Target:  5'- uGCGCggcgggucgCUGCCGCAAucguuuACGUGCucGCGUu -3'
miRNA:   3'- gUGCG---------GACGGCGUUu-----UGCAUG--CGCAc -5'
21216 3' -54.1 NC_004778.3 + 88692 0.67 0.916117
Target:  5'- gAUGUC-GCCGCGcagcAAGCG-GCGCGUGc -3'
miRNA:   3'- gUGCGGaCGGCGU----UUUGCaUGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 95982 0.67 0.916117
Target:  5'- gCACGCC-GCCGUGcGGACGgcCGCGc- -3'
miRNA:   3'- -GUGCGGaCGGCGU-UUUGCauGCGCac -5'
21216 3' -54.1 NC_004778.3 + 119554 0.67 0.916117
Target:  5'- cCGCGCCcggGCgGCAcuuuGGCG-GCGCGUa -3'
miRNA:   3'- -GUGCGGa--CGgCGUu---UUGCaUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 90709 0.67 0.910066
Target:  5'- gCGCGgcggcuccaaCCUGCCGCAAAAC-UGCgGCGa- -3'
miRNA:   3'- -GUGC----------GGACGGCGUUUUGcAUG-CGCac -5'
21216 3' -54.1 NC_004778.3 + 95392 0.67 0.910066
Target:  5'- cCACGCUgUGCUGCGGuAUGUcgaGCGUGa -3'
miRNA:   3'- -GUGCGG-ACGGCGUUuUGCAug-CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 49325 0.67 0.910066
Target:  5'- aCGCGgC-GCCGCAcAACGUGUGCGg- -3'
miRNA:   3'- -GUGCgGaCGGCGUuUUGCAUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 103780 0.67 0.910066
Target:  5'- aCACGCCgcaaCGCaAGAACGguugcACGUGUGg -3'
miRNA:   3'- -GUGCGGacg-GCG-UUUUGCa----UGCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 53940 0.67 0.910066
Target:  5'- uGCGCCgcgUGCCGCAcuAGCGUuaaggaGCGCa-- -3'
miRNA:   3'- gUGCGG---ACGGCGUu-UUGCA------UGCGcac -5'
21216 3' -54.1 NC_004778.3 + 83859 0.67 0.903767
Target:  5'- gCGCGCCagGCgcuggaggaGCGcuACGUGCGCGUu -3'
miRNA:   3'- -GUGCGGa-CGg--------CGUuuUGCAUGCGCAc -5'
21216 3' -54.1 NC_004778.3 + 72067 0.67 0.903767
Target:  5'- gCGCGCaaaCUGuuGCA--GCGUGCGCa-- -3'
miRNA:   3'- -GUGCG---GACggCGUuuUGCAUGCGcac -5'
21216 3' -54.1 NC_004778.3 + 114330 0.67 0.897223
Target:  5'- uGCGCCUGCuCGCuuuuguuGAGCGguuugacccUGCGCGc- -3'
miRNA:   3'- gUGCGGACG-GCGu------UUUGC---------AUGCGCac -5'
21216 3' -54.1 NC_004778.3 + 102705 0.67 0.897223
Target:  5'- cCGCGCUgcagGCCGCG--GCGUuuGCGg- -3'
miRNA:   3'- -GUGCGGa---CGGCGUuuUGCAugCGCac -5'
21216 3' -54.1 NC_004778.3 + 108408 0.67 0.897223
Target:  5'- cCACGCUuuUGCCGCGGcGCaGguggACGCGcUGg -3'
miRNA:   3'- -GUGCGG--ACGGCGUUuUG-Ca---UGCGC-AC- -5'
21216 3' -54.1 NC_004778.3 + 110015 0.67 0.890436
Target:  5'- cCACGCCgaUGUCGCGcuGAccGCGgUAgGCGUGa -3'
miRNA:   3'- -GUGCGG--ACGGCGU--UU--UGC-AUgCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 56495 0.67 0.890436
Target:  5'- uGCGCCUGagcaCCGCGcgcuAGC-UugGCGUGa -3'
miRNA:   3'- gUGCGGAC----GGCGUu---UUGcAugCGCAC- -5'
21216 3' -54.1 NC_004778.3 + 95788 0.67 0.890436
Target:  5'- gCGCGCCgGCCGCGcuGCGccC-CGUGg -3'
miRNA:   3'- -GUGCGGaCGGCGUuuUGCauGcGCAC- -5'
21216 3' -54.1 NC_004778.3 + 19416 0.68 0.883411
Target:  5'- uCACGCCUaCCGCGGucAGCGcgACaucgGCGUGg -3'
miRNA:   3'- -GUGCGGAcGGCGUU--UUGCa-UG----CGCAC- -5'
21216 3' -54.1 NC_004778.3 + 58135 0.68 0.883411
Target:  5'- aCGCGCCgacGCCuGCAAAGCccaGCGCGc- -3'
miRNA:   3'- -GUGCGGa--CGG-CGUUUUGca-UGCGCac -5'
21216 3' -54.1 NC_004778.3 + 117696 0.68 0.883411
Target:  5'- -cCGCCUGUCGCcgcauguuGAGACgGUGCGCa-- -3'
miRNA:   3'- guGCGGACGGCG--------UUUUG-CAUGCGcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.