miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 97165 0.66 0.7869
Target:  5'- cCGACaCGG-CGCCGCCGGCcagCGUgCGc -3'
miRNA:   3'- uGCUGcGCCuGUGGUGGUCGa--GCA-GC- -5'
21219 3' -58.2 NC_004778.3 + 97402 0.67 0.777793
Target:  5'- gGCGGCGCgcaaGGAaGCCGCCGGUUCu--- -3'
miRNA:   3'- -UGCUGCG----CCUgUGGUGGUCGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 101747 0.74 0.346658
Target:  5'- gGCGaACGCGG-CACUgGCCAcGCUCGUCGu -3'
miRNA:   3'- -UGC-UGCGCCuGUGG-UGGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 103660 0.66 0.7869
Target:  5'- aGCGugGCGGcaACGCgGUCAGCUUaUCGa -3'
miRNA:   3'- -UGCugCGCC--UGUGgUGGUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 106355 0.69 0.609678
Target:  5'- -gGACGCgcuggaaaaaauuGGACACCaaaacgACCuGCUCGUCa -3'
miRNA:   3'- ugCUGCG-------------CCUGUGG------UGGuCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 107694 0.67 0.730528
Target:  5'- uGCG-CGUGGAgGCCGCCAcGCgcgGUCa -3'
miRNA:   3'- -UGCuGCGCCUgUGGUGGU-CGag-CAGc -5'
21219 3' -58.2 NC_004778.3 + 108298 0.69 0.610686
Target:  5'- cACGGCGCucccGACGCCGCagAGCggcaCGUCGg -3'
miRNA:   3'- -UGCUGCGc---CUGUGGUGg-UCGa---GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 108349 0.68 0.701104
Target:  5'- cGCucCGCGGGCugCACCGcGCUgacgccUGUCGa -3'
miRNA:   3'- -UGcuGCGCCUGugGUGGU-CGA------GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 110945 0.69 0.630865
Target:  5'- -gGAgGCGGGCGCCACCccauuuuuaaaAGuCUCGUUc -3'
miRNA:   3'- ugCUgCGCCUGUGGUGG-----------UC-GAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 112551 0.7 0.55074
Target:  5'- gACGGCaGUGaGCACCGCCAuGUUUGUCGc -3'
miRNA:   3'- -UGCUG-CGCcUGUGGUGGU-CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 113285 0.66 0.8047
Target:  5'- cGCGACGCGcACGUCGCaCAGCgaGUCGa -3'
miRNA:   3'- -UGCUGCGCcUGUGGUG-GUCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 113901 0.66 0.813376
Target:  5'- gGCGAagGCGG-CGCCGCgGGUUCcUCGc -3'
miRNA:   3'- -UGCUg-CGCCuGUGGUGgUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 114366 0.69 0.606656
Target:  5'- cGCGcCGCGGGCgaggccgGCCcuugcguagcaacgGCCGGCUUGUCa -3'
miRNA:   3'- -UGCuGCGCCUG-------UGG--------------UGGUCGAGCAGc -5'
21219 3' -58.2 NC_004778.3 + 120697 0.67 0.740182
Target:  5'- gACGGgGUGGcGCGCCacggcGCCGGCggCGUCa -3'
miRNA:   3'- -UGCUgCGCC-UGUGG-----UGGUCGa-GCAGc -5'
21219 3' -58.2 NC_004778.3 + 121580 0.66 0.821891
Target:  5'- --aACGUGGGCGCCACCGcGCUUa--- -3'
miRNA:   3'- ugcUGCGCCUGUGGUGGU-CGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 127741 0.69 0.610686
Target:  5'- uACGAUGuCGGGCAUgCGCCuGCUCG-CGc -3'
miRNA:   3'- -UGCUGC-GCCUGUG-GUGGuCGAGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.