miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 89888 0.67 0.759206
Target:  5'- aGCGugGUGGGCGCaAgCGGCUUG-CGc -3'
miRNA:   3'- -UGCugCGCCUGUGgUgGUCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 88709 0.66 0.795872
Target:  5'- aGCGGCGCGuGCGCUcCCaauugAGCUUGUUGu -3'
miRNA:   3'- -UGCUGCGCcUGUGGuGG-----UCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 84353 0.69 0.655079
Target:  5'- uCGGCGUugaaaguccaGGACGCCGCuCGcgcgcugaugguagcGCUCGUCGg -3'
miRNA:   3'- uGCUGCG----------CCUGUGGUG-GU---------------CGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 83667 1.08 0.00213
Target:  5'- aACGACGCGGACACCACCAGCUCGUCGu -3'
miRNA:   3'- -UGCUGCGCCUGUGGUGGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 83033 0.68 0.720791
Target:  5'- uGCGACGCGG-CACgCGCCaaagaguggcagAGCaaGUCGc -3'
miRNA:   3'- -UGCUGCGCCuGUG-GUGG------------UCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 82671 0.69 0.607663
Target:  5'- uUGGCGCGGGCgccaaGCCGCCAaacacgguuuggacGgUCGUCGc -3'
miRNA:   3'- uGCUGCGCCUG-----UGGUGGU--------------CgAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 82612 0.66 0.7869
Target:  5'- gAUGAgGCGGcgaGCCGCCGcGCgauagCGUCGc -3'
miRNA:   3'- -UGCUgCGCCug-UGGUGGU-CGa----GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 81304 0.72 0.446593
Target:  5'- gGCGGCGCGGAUugCcCCuGUUUGUUGc -3'
miRNA:   3'- -UGCUGCGCCUGugGuGGuCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 80806 0.67 0.740182
Target:  5'- -aGACGCGGcaACgGCCGGUcgCGUCGc -3'
miRNA:   3'- ugCUGCGCCugUGgUGGUCGa-GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 72521 0.74 0.362161
Target:  5'- gACGACGCGGACGCCgACgAGC-CGa-- -3'
miRNA:   3'- -UGCUGCGCCUGUGG-UGgUCGaGCagc -5'
21219 3' -58.2 NC_004778.3 + 72026 0.67 0.730528
Target:  5'- cGCGACGaGGGCggcuucaucaGCCGCCAGCUgG-Ca -3'
miRNA:   3'- -UGCUGCgCCUG----------UGGUGGUCGAgCaGc -5'
21219 3' -58.2 NC_004778.3 + 69665 0.69 0.624808
Target:  5'- -aGGCGCuGGACGCCauucuuaacaaaaacACCAGCUCuUUGg -3'
miRNA:   3'- ugCUGCG-CCUGUGG---------------UGGUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 61360 0.73 0.394585
Target:  5'- cAUG-UGCGGACGgCGCCGGCgCGUCGu -3'
miRNA:   3'- -UGCuGCGCCUGUgGUGGUCGaGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 52856 0.66 0.8047
Target:  5'- aGCGAaaaUGCGGAgGCCAUuCAGCUUGa-- -3'
miRNA:   3'- -UGCU---GCGCCUgUGGUG-GUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 52055 0.71 0.530151
Target:  5'- aGCGACGCGGccggcgcgugcgcAUugCACCAGCgCG-CGg -3'
miRNA:   3'- -UGCUGCGCC-------------UGugGUGGUCGaGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 44178 0.68 0.701104
Target:  5'- -gGACGCGGGCGCCGu--GUaugUCGUCGu -3'
miRNA:   3'- ugCUGCGCCUGUGGUgguCG---AGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 43856 0.66 0.795872
Target:  5'- cCGACGCGGcaACAgguGCCGGCUCGg-- -3'
miRNA:   3'- uGCUGCGCC--UGUgg-UGGUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 38459 0.72 0.483308
Target:  5'- uCGuCGCGGuuccGCAUCAcguaugaguCCAGCUCGUCGa -3'
miRNA:   3'- uGCuGCGCC----UGUGGU---------GGUCGAGCAGC- -5'
21219 3' -58.2 NC_004778.3 + 36512 0.7 0.549754
Target:  5'- gACGACGCGGGugucgcgaggccuUACCuaugcgacGCCGGCUCGcugCGg -3'
miRNA:   3'- -UGCUGCGCCU-------------GUGG--------UGGUCGAGCa--GC- -5'
21219 3' -58.2 NC_004778.3 + 36467 0.72 0.483308
Target:  5'- gUGugGUGGGCGCCACCAcgcGCUUGg-- -3'
miRNA:   3'- uGCugCGCCUGUGGUGGU---CGAGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.