miRNA display CGI


Results 41 - 56 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21219 3' -58.2 NC_004778.3 + 121580 0.66 0.821891
Target:  5'- --aACGUGGGCGCCACCGcGCUUa--- -3'
miRNA:   3'- ugcUGCGCCUGUGGUGGU-CGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 14508 0.66 0.821891
Target:  5'- -aGGcCGCGGuGCGCaCGCCGGCUUG-CGc -3'
miRNA:   3'- ugCU-GCGCC-UGUG-GUGGUCGAGCaGC- -5'
21219 3' -58.2 NC_004778.3 + 10068 0.66 0.813376
Target:  5'- cCGACGCaGuaaACugCGCCAGCUCa--- -3'
miRNA:   3'- uGCUGCGcC---UGugGUGGUCGAGcagc -5'
21219 3' -58.2 NC_004778.3 + 113285 0.66 0.8047
Target:  5'- cGCGACGCGcACGUCGCaCAGCgaGUCGa -3'
miRNA:   3'- -UGCUGCGCcUGUGGUG-GUCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 52856 0.66 0.8047
Target:  5'- aGCGAaaaUGCGGAgGCCAUuCAGCUUGa-- -3'
miRNA:   3'- -UGCU---GCGCCUgUGGUG-GUCGAGCagc -5'
21219 3' -58.2 NC_004778.3 + 8483 0.66 0.8047
Target:  5'- -gGGCGCGGcccGCGCCccGCCAGUcaUCGUa- -3'
miRNA:   3'- ugCUGCGCC---UGUGG--UGGUCG--AGCAgc -5'
21219 3' -58.2 NC_004778.3 + 103660 0.66 0.7869
Target:  5'- aGCGugGCGGcaACGCgGUCAGCUUaUCGa -3'
miRNA:   3'- -UGCugCGCC--UGUGgUGGUCGAGcAGC- -5'
21219 3' -58.2 NC_004778.3 + 97165 0.66 0.7869
Target:  5'- cCGACaCGG-CGCCGCCGGCcagCGUgCGc -3'
miRNA:   3'- uGCUGcGCCuGUGGUGGUCGa--GCA-GC- -5'
21219 3' -58.2 NC_004778.3 + 91332 0.67 0.759206
Target:  5'- -gGACGCGGACggcguGCgCGCUAGCgugcuguugcgCGUCGc -3'
miRNA:   3'- ugCUGCGCCUG-----UG-GUGGUCGa----------GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 16927 0.67 0.748793
Target:  5'- cGCGAgccguuaCGCGGcGCACaugCACCGGCUCGaguucUCGg -3'
miRNA:   3'- -UGCU-------GCGCC-UGUG---GUGGUCGAGC-----AGC- -5'
21219 3' -58.2 NC_004778.3 + 120697 0.67 0.740182
Target:  5'- gACGGgGUGGcGCGCCacggcGCCGGCggCGUCa -3'
miRNA:   3'- -UGCUgCGCC-UGUGG-----UGGUCGa-GCAGc -5'
21219 3' -58.2 NC_004778.3 + 80806 0.67 0.740182
Target:  5'- -aGACGCGGcaACgGCCGGUcgCGUCGc -3'
miRNA:   3'- ugCUGCGCCugUGgUGGUCGa-GCAGC- -5'
21219 3' -58.2 NC_004778.3 + 72026 0.67 0.730528
Target:  5'- cGCGACGaGGGCggcuucaucaGCCGCCAGCUgG-Ca -3'
miRNA:   3'- -UGCUGCgCCUG----------UGGUGGUCGAgCaGc -5'
21219 3' -58.2 NC_004778.3 + 2069 0.67 0.730528
Target:  5'- cACGAUcugaugGCGGAuCACC-CCAGUUuCGUCa -3'
miRNA:   3'- -UGCUG------CGCCU-GUGGuGGUCGA-GCAGc -5'
21219 3' -58.2 NC_004778.3 + 83033 0.68 0.720791
Target:  5'- uGCGACGCGG-CACgCGCCaaagaguggcagAGCaaGUCGc -3'
miRNA:   3'- -UGCUGCGCCuGUG-GUGG------------UCGagCAGC- -5'
21219 3' -58.2 NC_004778.3 + 30721 0.66 0.825251
Target:  5'- cACGcUGCGGcCGCgGCCGGCUgccaucgaaaguucgCGUCGc -3'
miRNA:   3'- -UGCuGCGCCuGUGgUGGUCGA---------------GCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.