Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21219 | 3' | -58.2 | NC_004778.3 | + | 34049 | 0.72 | 0.446593 |
Target: 5'- uGCGACGCGcuugcuugaaACACCacguccgcguccGCCAGCUCGUUGu -3' miRNA: 3'- -UGCUGCGCc---------UGUGG------------UGGUCGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 95757 | 0.72 | 0.446593 |
Target: 5'- aACGugucauACGUGGuCACCACCacucgcGGCUCGUCa -3' miRNA: 3'- -UGC------UGCGCCuGUGGUGG------UCGAGCAGc -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 18344 | 0.69 | 0.630865 |
Target: 5'- --aACGCuGGACGCCAaCAGCUCGcgCGa -3' miRNA: 3'- ugcUGCG-CCUGUGGUgGUCGAGCa-GC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 83667 | 1.08 | 0.00213 |
Target: 5'- aACGACGCGGACACCACCAGCUCGUCGu -3' miRNA: 3'- -UGCUGCGCCUGUGGUGGUCGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 110945 | 0.69 | 0.630865 |
Target: 5'- -gGAgGCGGGCGCCACCccauuuuuaaaAGuCUCGUUc -3' miRNA: 3'- ugCUgCGCCUGUGGUGG-----------UC-GAGCAGc -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 52055 | 0.71 | 0.530151 |
Target: 5'- aGCGACGCGGccggcgcgugcgcAUugCACCAGCgCG-CGg -3' miRNA: 3'- -UGCUGCGCC-------------UGugGUGGUCGaGCaGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 101747 | 0.74 | 0.346658 |
Target: 5'- gGCGaACGCGG-CACUgGCCAcGCUCGUCGu -3' miRNA: 3'- -UGC-UGCGCCuGUGG-UGGU-CGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 69665 | 0.69 | 0.624808 |
Target: 5'- -aGGCGCuGGACGCCauucuuaacaaaaacACCAGCUCuUUGg -3' miRNA: 3'- ugCUGCG-CCUGUGG---------------UGGUCGAGcAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 127741 | 0.69 | 0.610686 |
Target: 5'- uACGAUGuCGGGCAUgCGCCuGCUCG-CGc -3' miRNA: 3'- -UGCUGC-GCCUGUG-GUGGuCGAGCaGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 38459 | 0.72 | 0.483308 |
Target: 5'- uCGuCGCGGuuccGCAUCAcguaugaguCCAGCUCGUCGa -3' miRNA: 3'- uGCuGCGCC----UGUGGU---------GGUCGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 34601 | 0.69 | 0.64096 |
Target: 5'- uGCGGCGCGcaAC-CCACCGGCaCGUUGc -3' miRNA: 3'- -UGCUGCGCc-UGuGGUGGUCGaGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 19433 | 0.71 | 0.544831 |
Target: 5'- uCGGCGCGccgaaACACCguggucaccaccgacACCAGCUUGUCGu -3' miRNA: 3'- uGCUGCGCc----UGUGG---------------UGGUCGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 36512 | 0.7 | 0.549754 |
Target: 5'- gACGACGCGGGugucgcgaggccuUACCuaugcgacGCCGGCUCGcugCGg -3' miRNA: 3'- -UGCUGCGCCU-------------GUGG--------UGGUCGAGCa--GC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 94822 | 0.69 | 0.610686 |
Target: 5'- -gGAUGCGGucuuGCGCCugCAGUUCGaUCu -3' miRNA: 3'- ugCUGCGCC----UGUGGugGUCGAGC-AGc -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 108298 | 0.69 | 0.610686 |
Target: 5'- cACGGCGCucccGACGCCGCagAGCggcaCGUCGg -3' miRNA: 3'- -UGCUGCGc---CUGUGGUGg-UCGa---GCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 89888 | 0.67 | 0.759206 |
Target: 5'- aGCGugGUGGGCGCaAgCGGCUUG-CGc -3' miRNA: 3'- -UGCugCGCCUGUGgUgGUCGAGCaGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 7156 | 0.71 | 0.511771 |
Target: 5'- gGCGG-GCGGcGCGCCgagcACUAGCUCGUUGa -3' miRNA: 3'- -UGCUgCGCC-UGUGG----UGGUCGAGCAGC- -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 107694 | 0.67 | 0.730528 |
Target: 5'- uGCG-CGUGGAgGCCGCCAcGCgcgGUCa -3' miRNA: 3'- -UGCuGCGCCUgUGGUGGU-CGag-CAGc -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 34151 | 0.68 | 0.701104 |
Target: 5'- gACGACGCGGuCGCCGgCGGCg----- -3' miRNA: 3'- -UGCUGCGCCuGUGGUgGUCGagcagc -5' |
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21219 | 3' | -58.2 | NC_004778.3 | + | 106355 | 0.69 | 0.609678 |
Target: 5'- -gGACGCgcuggaaaaaauuGGACACCaaaacgACCuGCUCGUCa -3' miRNA: 3'- ugCUGCG-------------CCUGUGG------UGGuCGAGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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